Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69420 627 / 0 DHHC-type zinc finger family protein (.1.2) AT4G15080 271 / 1e-81 DHHC-type zinc finger family protein (.1) AT3G22180 251 / 2e-74 DHHC-type zinc finger family protein (.1) AT2G33640 241 / 1e-71 DHHC-type zinc finger family protein (.1) AT4G01730 140 / 2e-35 DHHC-type zinc finger family protein (.1) AT3G26935 84 / 5e-17 DHHC-type zinc finger family protein (.1) AT3G48760 83 / 2e-16 DHHC-type zinc finger family protein (.1) AT5G41060 79 / 1e-15 DHHC-type zinc finger family protein (.1.2) AT5G04270 76 / 3e-15 DHHC-type zinc finger family protein (.1) AT4G24630 75 / 5e-14 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037133 [exp] 812 / 0 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10030426 [exp] 575 / 0 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10026632 [exp] 562 / 0 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10039043 [exp] 269 / 9e-81 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016036 [exp] 261 / 7e-79 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10027339 [exp] 264 / 1e-78 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10025157 [exp] 191 / 5e-53 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1) Lus10038029 [exp] 173 / 6e-47 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10009971 [exp] 112 / 5e-26 AT4G01730 432 / 5e-148 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G091700 [exp] 787 / 0 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.010G163200 [exp] 772 / 0 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.002G006900 [exp] 267 / 1e-80 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.016G018400 [exp] 251 / 3e-74 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 249 / 2e-73 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254366 [exp] 217 / 8e-66 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.014G112000 [exp] 189 / 5e-53 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G186800 [exp] 182 / 2e-50 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 84 / 9e-17 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 83 / 1e-16 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036798 pacid=23171283 polypeptide=Lus10036798 locus=Lus10036798.g ID=Lus10036798.BGIv1.0 annot-version=v1.0 ATGAGGAAGCATGGTTGGGAGCTTCCATATCACCCTCTTCAGGTGGTGGCTGTTGCAGTGTTTCTGGCACTGGGTTTTGCTTTCTATGTGTTCTTTGCAC CTTTTGTTGGGAGGGAGATGTTCCAGTACATTGCAATGGGAATCTACACTCCTCTGATCACATGTGCCTTCGGCCTATATATATGGTGTGCAGCATCCGA TCCTGCAGATCCAGGAGTCTTCAGATCCAAGAAGTACCTTAACATTCCAGAGAATGAGAAGCACCCTCAATATAAAGGCTCCAAGCAAGGCATTGAGTCG ACTTCATCAATGCACGATGGCAATTCAACGATCGAGAAGGGTGTGGAAGGTGCAACCGATGACTCGAAGAATGAAACAGAGAGCAAGCCCTCATGTTTAA TGTTGGCTCTATCCCCTTGTGCTGCTGCCTGTAGTAATGTCTGCATTTCGAGTGACAAACACTCGGAGCAGATGAGTGAAGATGGCATGTTCTATTGCAG CTTGTGTGAAGTTGAGGTTTTCAAGTACAGCAAGCACTGTAGAGTCTGCGATAAATGTGTCGACCAGTTTGACCATCATTGCAGGTGGATAAACAATTGT ATAGGCAAGAAGAATTACAGAAAGTTCTTCACCCTCATGGTTTCTGCTCTTCTCTTGCTTATATTCCAATGGGCAACAGGGATTCTCGTACTCGTCTGCT GCTTCGTTGAAAGGAAGCGCTTCGTAGCTGATATCTCCACGAAATTGGGAAGCAGTTTCTCCTTGGTGCCCTATGTGATTGTGCTGGCAGTATGCACCAT TCTAGCCATGATCGCAACGCTGCCCCTCGCCCAGCTCTTCTTCTTCCACATCCTGCTCATTAAAAAGGGAATCAGCACTTACGATTACATAATAGCGCTA AGGGAGCAAGACCAAGAGCAGCAAGGAATCGGAGGAGGCCAGCAGAGTCCGCAAATGTCGCAAGTTAGTTCACTTACAGGGCTAAGTAGTGCCAGCTCGT TCTCGACTTTCCACCGCGGTGCCTGGTGTACACCTCCTCGCCTGTTTCTCGAAGACCAGTTTGATGTTGTTCCTCCGGACACTGGATCGGTGAGCTCGTA CGGAAAGAAGACAATGAGGGAAGAACCAATCAAGAAAAAGAACCCAGCTGCTGTAAAGATCAGCCCTTGGACATTGGCCAAACTGAACGCAGATGTAGTC TCGAAAGCTGCAGCCGAGGCAAGAAAGAAATCGAAGATCCTCCAGCCGGTAACGAGACAGGAACCTTCGTTTCCGCTAGAAAGAGACGACAGTTATGGAA GCAGTGGGCGGAGAATGGTCCCGAGACTTGACAACAATCGGAGACGAGCTAGTAAAAGGATCCGCCTCCCTGCTGACCTCCCGATGGAGCCAAAGACTGT TGGTGGCTCGGGCATTACGGTAACTTCCTCCTCCAGTCTAGCCCCTCTCCAGCTCGAGGCTCGGAGTGCATTCCAGCCAAGTAGAGCAATTGGGGCTGTC GCATCCTCTCCTGAAAGCAGTCTGGATTCTCCAGAGATTCACCCTTTTCGGGTGTCTTCATCGGGGGCCGAAGAGTCGAGGATGCTGACCGGTCTTCCTC CGATTATTGGCTGTGGTCCTTCTAACAGCGGGGGGTTCCCACTCTCGAGGTCTACTAGCGATGGATATGAAGCATCTGGTGGTGAAGACAGTGATAGAGT CCCTACGAGGATTGTGCAGAGATCGACTAACTGGAGTAACGTCCTATTCCGAGCAAATCAGGATGAAGGGATCATGAGGCTGAAAGCAGCATCCTCATCC AGCCAGATGAACAGTGGAAAGCTTTGA
AA sequence Show only first row Show all	>Lus10036798 pacid=23171283 polypeptide=Lus10036798 locus=Lus10036798.g ID=Lus10036798.BGIv1.0 annot-version=v1.0 MRKHGWELPYHPLQVVAVAVFLALGFAFYVFFAPFVGREMFQYIAMGIYTPLITCAFGLYIWCAASDPADPGVFRSKKYLNIPENEKHPQYKGSKQGIES TSSMHDGNSTIEKGVEGATDDSKNETESKPSCLMLALSPCAAACSNVCISSDKHSEQMSEDGMFYCSLCEVEVFKYSKHCRVCDKCVDQFDHHCRWINNC IGKKNYRKFFTLMVSALLLLIFQWATGILVLVCCFVERKRFVADISTKLGSSFSLVPYVIVLAVCTILAMIATLPLAQLFFFHILLIKKGISTYDYIIAL REQDQEQQGIGGGQQSPQMSQVSSLTGLSSASSFSTFHRGAWCTPPRLFLEDQFDVVPPDTGSVSSYGKKTMREEPIKKKNPAAVKISPWTLAKLNADVV SKAAAEARKKSKILQPVTRQEPSFPLERDDSYGSSGRRMVPRLDNNRRRASKRIRLPADLPMEPKTVGGSGITVTSSSSLAPLQLEARSAFQPSRAIGAV ASSPESSLDSPEIHPFRVSSSGAEESRMLTGLPPIIGCGPSNSGGFPLSRSTSDGYEASGGEDSDRVPTRIVQRSTNWSNVLFRANQDEGIMRLKAASSS SQMNSGKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69420			DHHC-type zinc finger family p...		Lus10036798 [exp]	0	1
AT1G35780			unknown protein		Lus10009931 [exp]	1.4	0.8819
AT1G69420			DHHC-type zinc finger family p...		Lus10037133 [exp]	1.7	0.8801
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	2.4	0.8854
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10034519 [exp]	3.5	0.8641
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10011149 [exp]	3.5	0.8749
AT2G46980			unknown protein		Lus10009259 [exp]	4.9	0.8615
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10016688 [exp]	6.7	0.8457
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	6.7	0.8601
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	7.0	0.8620
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10037720 [exp]	7.4	0.7996

Compare expression of checked genes

Lus10036798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.