Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29180 181 / 6e-53 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) AT1G13970 178 / 6e-52 Protein of unknown function (DUF1336) (.1) AT1G10410 174 / 2e-50 Protein of unknown function (DUF1336) (.1) AT5G39430 172 / 2e-49 Protein of unknown function (DUF1336) (.1) AT1G59650 147 / 2e-40 CW14 Protein of unknown function (DUF1336) (.1) AT5G35180 54 / 7e-08 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT5G25010 44 / 0.0001 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037132 [exp] 304 / 7e-101 AT3G29180 470 / 9e-163 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Lus10026633 [exp] 265 / 2e-85 AT1G13970 504 / 4e-176 Protein of unknown function (DUF1336) (.1) Lus10030425 [exp] 259 / 2e-83 AT1G13970 499 / 2e-174 Protein of unknown function (DUF1336) (.1) Lus10000174 [exp] 163 / 3e-50 AT1G13970 224 / 2e-72 Protein of unknown function (DUF1336) (.1) Lus10010740 [exp] 146 / 5e-40 AT1G59650 610 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10036683 [exp] 142 / 1e-38 AT1G59650 603 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10039463 [exp] 142 / 3e-38 AT1G59650 478 / 3e-165 Protein of unknown function (DUF1336) (.1) Lus10005831 [exp] 139 / 3e-37 AT1G59650 471 / 1e-162 Protein of unknown function (DUF1336) (.1) Lus10019591 [exp] 60 / 1e-09 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163100 [exp] 206 / 2e-62 AT1G13970 543 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G088000 [exp] 175 / 9e-51 AT3G29180 615 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Potri.008G190500 [exp] 149 / 9e-41 AT1G59650 579 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.010G040100 [exp] 147 / 4e-40 AT1G59650 598 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G074800 [exp] 143 / 5e-39 AT1G59650 472 / 6e-164 Protein of unknown function (DUF1336) (.1) Potri.018G113100 [exp] 50 / 9e-07 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10036799 pacid=23171217 polypeptide=Lus10036799 locus=Lus10036799.g ID=Lus10036799.BGIv1.0 annot-version=v1.0 ATGGGGGGATGCGTTTCATCATCAGCTCATCAAAGTGAGGCCGGAAGGAGGGAAGAGCAAGATCAGGAGGAGATTCTCGAGGCGATCGGCAAAGATCTCG ACCATGATGTCCGACATACAAATGCCGATGAAGAGCTGAGCAACGATTCTGCATTGAACGAGTTTGTCCGTCGTCTAAGTTTCGACGGTGGTTGCAGGAT GTCCGAAGTTTCTAACAAAAACTTCCATGTCACTCAGATGCAGTGGAACCAATGCCACATCGATCAAAGTGGTTCAGGAGGTGAGAAAACCTGCTACAGG CCAAAAGCAGGGCATCTAATCACAAGAGAAGAGAAACCGATTGCCGGAACATGGTCCGAGGTTTCGCCTTCAGTTTTCAAGCTTCGTGGAGAGAGTTACT TCAGTAACAAGCAGAAACAAGCGGCTCCGGAGATAAGCCCATATGTCCCAATTGGAGTGGATCTATTCATGTGCCAGAAAAAGATCAGCCACATTGCCCA ACACCTTGACCTTCCTCAGGTCAACCCTCATGACAAAGTTCCATCTCTCTTGATAGTCAACATCCAGATCCCTACCTACCCGGTTGCAATGTTCCATGGG GACTGCGACGGAGAAGGCATGAGCCTTGTGCTCTACTTCAAGCTATGCGACGAGTTCGACACTCGAGTCTCTCCTCATTTCCAGGAAACCCTCAGGGGTT CGAATTACTTGGAAATTGACCCGGACATTCACCGGTTCAGCTACATTTCGAGGAAGGGTCTCGAATCGTTTAGGGACAGGTTGAAGCTCGGGATTGCAAA TGTTGGCTTGACAATTCAGGCACAGAAGCCTGAAGAATTGCCGGAGCAAGCACTGTGCTGTTTGAGGTTGAACAAGATCGATTTCGTGAACCGTGGCCAG ATTCCTACCCTTGTAACCCAGGATGATTGA
AA sequence Show only first row Show all	>Lus10036799 pacid=23171217 polypeptide=Lus10036799 locus=Lus10036799.g ID=Lus10036799.BGIv1.0 annot-version=v1.0 MGGCVSSSAHQSEAGRREEQDQEEILEAIGKDLDHDVRHTNADEELSNDSALNEFVRRLSFDGGCRMSEVSNKNFHVTQMQWNQCHIDQSGSGGEKTCYR PKAGHLITREEKPIAGTWSEVSPSVFKLRGESYFSNKQKQAAPEISPYVPIGVDLFMCQKKISHIAQHLDLPQVNPHDKVPSLLIVNIQIPTYPVAMFHG DCDGEGMSLVLYFKLCDEFDTRVSPHFQETLRGSNYLEIDPDIHRFSYISRKGLESFRDRLKLGIANVGLTIQAQKPEELPEQALCCLRLNKIDFVNRGQ IPTLVTQDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13970			Protein of unknown function (D...		Lus10036799 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10031578 [exp]	1.0	0.9214
AT5G63180			Pectin lyase-like superfamily ...		Lus10006241 [exp]	2.2	0.9076
AT3G10360		APUM4	pumilio 4 (.1)		Lus10037976 [exp]	5.4	0.8361
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	6.3	0.9121
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035585 [exp]	6.3	0.8869
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10022236 [exp]	7.3	0.9005
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	7.5	0.9091
AT1G13970			Protein of unknown function (D...		Lus10000174 [exp]	8.5	0.8869
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	8.5	0.9089
					Lus10017767 [exp]	9.6	0.8342

Compare expression of checked genes

Lus10036799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.