Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13960 354 / 4e-118 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT2G03340 352 / 4e-117 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT3G01080 264 / 3e-84 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT5G07100 234 / 3e-74 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G38470 234 / 9e-72 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT4G26640 229 / 4e-70 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT4G26440 230 / 1e-69 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT2G30250 201 / 4e-60 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G37260 196 / 7e-59 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT2G04880 182 / 2e-52 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037131 [exp] 668 / 0 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10000173 [exp] 612 / 0 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10030424 [exp] 422 / 2e-145 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10026634 [exp] 396 / 2e-135 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10015377 [exp] 319 / 4e-104 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10033000 [exp] 263 / 1e-82 AT2G03340 367 / 1e-121 WRKY DNA-binding protein 3 (.1) Lus10032887 [exp] 253 / 8e-77 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10027139 [exp] 249 / 3e-75 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10001265 [exp] 244 / 3e-75 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163000 [exp] 373 / 2e-125 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.008G091900 [exp] 355 / 6e-119 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.004G120800 [exp] 310 / 2e-100 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.017G088300 [exp] 252 / 6e-78 AT1G13960 286 / 9e-90 WRKY DNA-binding protein 4 (.1.2) Potri.016G128300 [exp] 245 / 4e-75 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.011G169300 [exp] 247 / 1e-74 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G153400 [exp] 240 / 4e-73 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.001G361600 [exp] 234 / 3e-71 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G087900 [exp] 234 / 3e-71 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.019G123500 [exp] 233 / 3e-70 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10036800 pacid=23171207 polypeptide=Lus10036800 locus=Lus10036800.g ID=Lus10036800.BGIv1.0 annot-version=v1.0 ATGGCGGAAAATGAAGGCCGGCGACGAGGACCAGCTGCTCCAGCGGCGGCGGAGAGAACAACCGTAGTTCCTTCTTCTCGCCCCACCACCATCGCCCTTC CGCCTCGCTCCTTCGGCGGCGACAGCACGGTGTTCAGCGGTGGCGGGTTCGGTTTCAGCCCGGGTCCGATGAGTCTGGTTTCCAGCTTCTTCTCCGACGG CGAGGATAACAAGTCGTTCTCCCAGCTTCTCGCTGGTGTTATGTCTCCGGTGGCGGTGCCTTCTACCAAGGGAGAGAAAGGGTCGGCCAATTTGTCGGTT GCCCCGGCTCCGCCGGCGGCGTCGATGTTCATGGATCCGCCGGCGATTAGTCCAGCGACGCTGCTTGAATCGCCGGAATTCCGAATGTTTTATCCTCAGG AATCTTATGGAATGAGCAACCAGCAGGCCTTAGCTCTGGTACCAGCATCGGCACTTCCACATCACGAGACAACGAAAGACAACTACTCCAAATCGACAAA GATGGAGACTTATCCCGATCAAGGGTACCAATCCTCGTCATTTATCGTGGTTGACAAGCCAGCTGACGACGGGTACAAGTGGAGGAAGTACGGGCAGAAA CAGGTGAAAGGCAGTGAGTTGCCCAGGAGTTACTACAAATGCACACACCTGAAATGCCCCGTAACGAAAAAGGTTGAGAGGTCCCTTGAAGGACAAGTAA CTGAGATCATATATAAAGGGCAGCATAACCATCATCCTCCACAGTCCAACAAACGCGGTAAGGATCAGGGGAATAATGTCGAGTTGGGTTCGCAGTTTCG GGATTCGAAGGAGTCTAGTCAAGCCACAGCAGACCGTTTGTCCGCGAGTAGTGACAGTGATGCCGAGACAGCCAATTACGAAGCCGAAGAGCCTGATGCC AAACGAAGAAATATTGAGGTTAGGGTAACTGACTCAACTTCATCACATAGAACTGTCACGGAACCGAGGATCATTGTGCAGACAACGAGTGAAGTTGATC TCCTCGACGATGGATACAGATGGCGAAAGTACGGGCAGAAGGTCGTTAAAGGAAATCCTTATCCAAGGAGCTACTACAAATGCACAACGCAAGGGTGCAA TGTAAGAAAACATGTCGAGAGGGCTGCAACGGATCCCAAAGCGGTTATAACAACGTACGAGGGAAAACACAACCACGACGTCCCAGCATCCAAGAACAGC AGCCATAGTAGTACTGCTAACAGTAGTCTTGACAAGCTTTCGACTCAGCAACCCGTGGTGCAGTTGCGGTTGAAAGAACGGATAGCATGA
AA sequence Show only first row Show all	>Lus10036800 pacid=23171207 polypeptide=Lus10036800 locus=Lus10036800.g ID=Lus10036800.BGIv1.0 annot-version=v1.0 MAENEGRRRGPAAPAAAERTTVVPSSRPTTIALPPRSFGGDSTVFSGGGFGFSPGPMSLVSSFFSDGEDNKSFSQLLAGVMSPVAVPSTKGEKGSANLSV APAPPAASMFMDPPAISPATLLESPEFRMFYPQESYGMSNQQALALVPASALPHHETTKDNYSKSTKMETYPDQGYQSSSFIVVDKPADDGYKWRKYGQK QVKGSELPRSYYKCTHLKCPVTKKVERSLEGQVTEIIYKGQHNHHPPQSNKRGKDQGNNVELGSQFRDSKESSQATADRLSASSDSDAETANYEAEEPDA KRRNIEVRVTDSTSSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERAATDPKAVITTYEGKHNHDVPASKNS SHSSTANSSLDKLSTQQPVVQLRLKERIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10036800 [exp]	0	1
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10040698 [exp]	1.0	0.9755
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Lus10013887 [exp]	1.7	0.9674
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10000173 [exp]	3.5	0.9748
AT1G11340			S-locus lectin protein kinase ...		Lus10041679 [exp]	4.8	0.9497
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10017629 [exp]	9.2	0.9606
					Lus10041112 [exp]	10.7	0.9249
AT2G18890			Protein kinase superfamily pro...		Lus10025468 [exp]	11.4	0.9562
AT3G52710			unknown protein		Lus10017030 [exp]	12.0	0.9571
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10040116 [exp]	12.2	0.9638
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10029393 [exp]	15.5	0.9613

Compare expression of checked genes

Lus10036800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.