Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13950 292 / 5e-103 EIF5A, ATELF5A-1, EIF-5A eukaryotic elongation factor 5A-1 (.1) AT1G69410 286 / 1e-100 ATELF5A-3 eukaryotic elongation factor 5A-3 (.1) AT1G26630 258 / 2e-89 ATELF5A-2, FBR12 FUMONISIN B1-RESISTANT12, EUKARYOTIC ELONGATION FACTOR 5A-2, Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein (.1), Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037129 [exp] 326 / 2e-116 AT1G13950 292 / 4e-103 eukaryotic elongation factor 5A-1 (.1) Lus10026637 [exp] 315 / 3e-112 AT1G13950 295 / 4e-104 eukaryotic elongation factor 5A-1 (.1) Lus10030422 [exp] 314 / 9e-112 AT1G13950 295 / 3e-104 eukaryotic elongation factor 5A-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G107300 [exp] 306 / 1e-108 AT1G13950 290 / 4e-102 eukaryotic elongation factor 5A-1 (.1) Potri.008G092000 [exp] 306 / 1e-108 AT1G13950 292 / 5e-103 eukaryotic elongation factor 5A-1 (.1) Potri.006G185000 [exp] 306 / 1e-108 AT1G13950 291 / 6e-103 eukaryotic elongation factor 5A-1 (.1) Potri.010G162800 [exp] 299 / 6e-106 AT1G13950 286 / 7e-101 eukaryotic elongation factor 5A-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF00467 [flax] [poplar] KOW KOW motif CL0021 [flax] [poplar] OB PF01287 [flax] [poplar] eIF-5a Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
Representative CDS sequence Show only first row Show all	>Lus10036801 pacid=23171300 polypeptide=Lus10036801 locus=Lus10036801.g ID=Lus10036801.BGIv1.0 annot-version=v1.0 ATGTCGGACGAGGAGCATCAGTTCGAGTCCAAGGCCGACGCCGGAGCCTCCAAGACTTACCCCCAGCAGGCCGGTACCATCCGTAAGAACGGATACATCG TCATCAAGGGCCGCCCTTGCAAGGTCGTTGAAGTTTCCACTTCCAAGACTGGCAAGCACGGTCATGCTAAGTGTCACTTTGTTGCCATTGATATCTTCAA TGGGAAGAAGCTTGAGGATATTGTTCCCTCTTCCCACAATTGTGATGTGCCACATGTGAACCGTACTGATTACCAGCTGATTGACATCTCTGAGGATGGC TTTGTGAGTCTGCTCACTGACAATGGTAACACCAAGGATGATCTGAAGCTCCCCACTGATGAGGCTCTCCTCACTCTGATCAAGGACGGATTTGCTGAGG GTAAAGACCTTGTGGTGAGTGTGATGTCTGCAATGGGAGAGGAGCAGATCAATGCTCTCAAGGATATCGGCCCCAAGTAA
AA sequence Show only first row Show all	>Lus10036801 pacid=23171300 polypeptide=Lus10036801 locus=Lus10036801.g ID=Lus10036801.BGIv1.0 annot-version=v1.0 MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG FVSLLTDNGNTKDDLKLPTDEALLTLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10036801 [exp]	0	1
AT2G43100		ATLEUD1, IPMI2	isopropylmalate isomerase 2 (....		Lus10004742 [exp]	4.5	0.8000
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10014530 [exp]	6.9	0.7948
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10014607 [exp]	14.1	0.7520
AT2G31305		INH3	inhibitor-3 (.1)		Lus10018105 [exp]	14.7	0.6892
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10020216 [exp]	17.5	0.7894
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	21.0	0.7968
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10015772 [exp]	24.6	0.7447
AT3G55780			Glycosyl hydrolase superfamily...		Lus10028258 [exp]	27.4	0.7396
AT4G10810			unknown protein		Lus10023038 [exp]	28.1	0.7749
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10026839 [exp]	28.5	0.7723

Compare expression of checked genes

Lus10036801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.