Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69390 230 / 1e-76 ARC12, ATMINE1 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037128 [exp] 401 / 7e-144 AT1G69390 256 / 2e-86 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Lus10026638 [exp] 286 / 2e-98 AT1G69390 247 / 4e-83 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Lus10030421 [exp] 283 / 4e-97 AT1G69390 248 / 9e-84 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G162600 [exp] 275 / 8e-94 AT1G69390 272 / 5e-93 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Potri.008G092300 [exp] 270 / 2e-92 AT1G69390 270 / 2e-92 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Potri.004G121000 [exp] 163 / 2e-50 AT1G69390 191 / 2e-61 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Potri.017G088401 [exp] 87 / 2e-22 AT1G69390 86 / 2e-22 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03776 [flax] [poplar] MinE Septum formation topological specificity factor MinE
Representative CDS sequence Show only first row Show all	>Lus10036802 pacid=23170992 polypeptide=Lus10036802 locus=Lus10036802.g ID=Lus10036802.BGIv1.0 annot-version=v1.0 ATGGCGATTTCATCAGGGGATCTGAGGGTCTCTGCAACTTTGGCATCATTCCATAATCATCCATTTACAAGATCGCATTCTTCTTCCACTTCGAAGGTGG ACTTCATTGCATTCCCCAGCACAAGATCCGGAACCAATTCTCCACCTGCAATCATCTTTCCAAATCCTAAGCCGCATGGTCCCATCTATCGATCTGCTGC ACCTTCTTCGGATTATCAGCTGTCCACAACATCAATAGACGAAGAAGACACAGAAATCTTCCTTCTCAGCACCATAAACATGAACCTCTTCGAACGCTTG ACCTTAGCCTGGAAGATAATCTTCCCATCTCCCGCCAGAAGAAGGAGCTCGAATGCTAGGATTGCCAAGCAGCGGCTAAAGATGATCCTCTTCTCCGACC GGTGTGCAGTCAGCGACGAGGCCAAGAGGAAGATCGTGGGCAACATTGTAAATTCACTCTCAGAGGTTGTCGAGATCGAGTCTCAGGACAAAGTCCAGCT GAATGTGAGTACCGACACGGACCTTGGGACCATGTACTCCGTAACGGTACCGGTTCGCAGGGTGAAGGCTGAGTATCTAGAGGGGGAAGAGATTGGATCC ATAACGAACATTGAGTACAAAGACACTGGCAACCAATCTGAATCGGTCGATGTCATGTTCGATTTCTATGTCCCTGACGAAAGGTCTCGGTGA
AA sequence Show only first row Show all	>Lus10036802 pacid=23170992 polypeptide=Lus10036802 locus=Lus10036802.g ID=Lus10036802.BGIv1.0 annot-version=v1.0 MAISSGDLRVSATLASFHNHPFTRSHSSSTSKVDFIAFPSTRSGTNSPPAIIFPNPKPHGPIYRSAAPSSDYQLSTTSIDEEDTEIFLLSTINMNLFERL TLAWKIIFPSPARRRSSNARIAKQRLKMILFSDRCAVSDEAKRKIVGNIVNSLSEVVEIESQDKVQLNVSTDTDLGTMYSVTVPVRRVKAEYLEGEEIGS ITNIEYKDTGNQSESVDVMFDFYVPDERSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10036802 [exp]	0	1
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	1.0	0.9106
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10037128 [exp]	2.8	0.8880
					Lus10035688 [exp]	5.5	0.8793
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	5.7	0.8780
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	6.9	0.8657
AT2G45250			Integral membrane protein hemo...		Lus10003319 [exp]	7.5	0.8544
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10020413 [exp]	8.8	0.8416
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014327 [exp]	9.8	0.8415
AT5G54980			Uncharacterised protein family...		Lus10034604 [exp]	11.3	0.8394
AT3G53730			Histone superfamily protein (....		Lus10004949 [exp]	11.4	0.8695

Compare expression of checked genes

Lus10036802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.