Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69380 469 / 6e-166 RRG RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1) AT5G13610 348 / 4e-118 Protein of unknown function (DUF155) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037127 [exp] 653 / 0 AT1G69380 415 / 2e-145 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1) Lus10001978 [exp] 354 / 4e-120 AT5G13610 457 / 4e-160 Protein of unknown function (DUF155) (.1) Lus10030300 [exp] 348 / 1e-117 AT5G13610 454 / 4e-159 Protein of unknown function (DUF155) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G162500 [exp] 526 / 0 AT1G69380 511 / 0.0 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1) Potri.008G092400 [exp] 526 / 0 AT1G69380 505 / 2e-180 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1) Potri.010G216300 [exp] 378 / 1e-129 AT5G13610 424 / 3e-147 Protein of unknown function (DUF155) (.1) Potri.008G045200 [exp] 374 / 6e-128 AT5G13610 436 / 5e-152 Protein of unknown function (DUF155) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02582 [flax] [poplar] DUF155 Uncharacterised ACR, YagE family COG1723
Representative CDS sequence Show only first row Show all	>Lus10036803 pacid=23171119 polypeptide=Lus10036803 locus=Lus10036803.g ID=Lus10036803.BGIv1.0 annot-version=v1.0 ATGGGTGGATGGCGAGCTAGTGCTTCGCTCCTCAAGCACGCATCAACAAGAAGAAGACCTAATCCATCTTTTTCGTTCATCTTCGCTCCTTCCGCTGATT ATTCTTCCTGTTTCCGGCCATGTCGCAGACCTCCGCAGGGTGCTGTTTGCTCGTCGTCGTCGTCCTGGTTCAGGTCGTTTTCCGGCTACCCATCTCGAGT TCCGGCTTATACCAGCGACAACGAGTCTGGATGTCATGATCCCGCTCAGAATTTCCCCATGGAGCTTAAGGAAGACGAGAGCGAAATTGGGAAGATTCCC GTCAAAGCCTATTTCCTCTGTACCAGTATTGATTTGAAGAGCATGCAAGGGGAGAATTTAATCAATGTTGTTCCTCCCACCTCTCGTTCAACGAATTACA TTGTCCTCAAATACTATGATTACCAACCGGAAATTACTACACTTGGAATCAAGGAGAGCTTGAGCACGCGGTACATGGTTGTGTTCCAGTACGGGTCTGC TGTTCTAATCAACATTGAAGATCATGAAGTTGAAAGTTACTTAGACTTAGTTAGGAGACATGCTTCCGGATTGCTTAAAGAGATGAGGAAAGATGATTAC GCGATAAAAGAGAAGCCACGCCTGATGAACGACATGCAGGGAGGTCTGGACTATATAGTTCTGAGAAGCTTAGATACTGACAGCATCCGCATCATTGGGA GCGTACTCGGGCAAAGTATTGCTTTGGATTACTTTGTTTCACAGGTTGATGGAATGGTGGAAGAGTTTGCTGGCATAAACCGTGGAATGGAGAAGACCGG TACTTTCACCATGGACAGGACGAAGCTCATCAAACTTGTTGGGAAGGCGAATTCGAATCTAGCTGACGTGATTCTGAAAGTTGGTCTCTTTGAAAGGTCT GAAATTGCTTGGAGGGATGCTAAGTATGCTCAAATATACGAGTACCTTAGGGATGAGTACGAGGTGAATCAACGATTTGGAAGCTTAGATTTCAAGTTGA AATTCGTCGAGCACAACATTCATTTCCTTCAAGAAGTTATACAGAACAGGCGCTCAGATCTTTTGGAATGGTGCATCATCTTCCTCTTAACTTTGGAGAA TGCTATATCGATGTATGAGATAGTTACATCAACTTAA
AA sequence Show only first row Show all	>Lus10036803 pacid=23171119 polypeptide=Lus10036803 locus=Lus10036803.g ID=Lus10036803.BGIv1.0 annot-version=v1.0 MGGWRASASLLKHASTRRRPNPSFSFIFAPSADYSSCFRPCRRPPQGAVCSSSSSWFRSFSGYPSRVPAYTSDNESGCHDPAQNFPMELKEDESEIGKIP VKAYFLCTSIDLKSMQGENLINVVPPTSRSTNYIVLKYYDYQPEITTLGIKESLSTRYMVVFQYGSAVLINIEDHEVESYLDLVRRHASGLLKEMRKDDY AIKEKPRLMNDMQGGLDYIVLRSLDTDSIRIIGSVLGQSIALDYFVSQVDGMVEEFAGINRGMEKTGTFTMDRTKLIKLVGKANSNLADVILKVGLFERS EIAWRDAKYAQIYEYLRDEYEVNQRFGSLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTLENAISMYEIVTST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Lus10036803 [exp]	0	1
AT2G24960			unknown protein		Lus10026250 [exp]	21.2	0.7759
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10020087 [exp]	27.7	0.7566
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10030537 [exp]	29.2	0.7473
AT1G75440		UBC16	ubiquitin-conjugating enzyme 1...		Lus10041791 [exp]	41.8	0.7554
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10040737 [exp]	54.5	0.7287
AT5G16610			unknown protein		Lus10000454 [exp]	57.8	0.6462
AT5G07610			F-box family protein (.1)		Lus10024021 [exp]	63.4	0.7239
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10024243 [exp]	78.5	0.7084
AT3G07800			Thymidine kinase (.1)		Lus10006394 [exp]	79.0	0.6760
AT2G43210			Ubiquitin-like superfamily pro...		Lus10025504 [exp]	89.6	0.7200

Compare expression of checked genes

Lus10036803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.