Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03350 207 / 4e-69 Protein of unknown function, DUF538 (.1) AT5G37070 137 / 2e-41 Protein of unknown function, DUF538 (.1) AT3G08890 134 / 2e-40 Protein of unknown function, DUF538 (.1.2) AT5G01610 130 / 8e-39 Protein of unknown function, DUF538 (.1) AT1G61667 60 / 1e-11 Protein of unknown function, DUF538 (.1) AT5G16380 59 / 6e-11 Protein of unknown function, DUF538 (.1) AT4G02360 57 / 1e-10 Protein of unknown function, DUF538 (.1) AT5G19860 57 / 2e-10 Protein of unknown function, DUF538 (.1) AT4G02370 52 / 1e-08 Protein of unknown function, DUF538 (.1) AT3G07470 51 / 2e-08 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037126 [exp] 290 / 6e-102 AT2G03350 235 / 3e-80 Protein of unknown function, DUF538 (.1) Lus10026639 [exp] 233 / 2e-79 AT2G03350 262 / 1e-90 Protein of unknown function, DUF538 (.1) Lus10030420 [exp] 230 / 4e-78 AT2G03350 259 / 1e-89 Protein of unknown function, DUF538 (.1) Lus10012232 [exp] 135 / 6e-41 AT3G08890 297 / 1e-104 Protein of unknown function, DUF538 (.1.2) Lus10002862 [exp] 134 / 3e-40 AT3G08890 299 / 2e-105 Protein of unknown function, DUF538 (.1.2) Lus10022674 [exp] 125 / 9e-37 AT3G08890 273 / 1e-94 Protein of unknown function, DUF538 (.1.2) Lus10012498 [exp] 110 / 8e-32 AT3G08890 214 / 1e-72 Protein of unknown function, DUF538 (.1.2) Lus10007617 [exp] 59 / 3e-11 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Lus10018396 [exp] 57 / 2e-10 AT1G61667 176 / 5e-57 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G092500 [exp] 223 / 2e-75 AT2G03350 281 / 4e-98 Protein of unknown function, DUF538 (.1) Potri.010G162400 [exp] 218 / 3e-73 AT2G03350 277 / 1e-96 Protein of unknown function, DUF538 (.1) Potri.016G125300 [exp] 131 / 4e-39 AT3G08890 292 / 8e-103 Protein of unknown function, DUF538 (.1.2) Potri.006G104000 [exp] 130 / 5e-39 AT3G08890 296 / 1e-104 Protein of unknown function, DUF538 (.1.2) Potri.014G127500 [exp] 66 / 1e-13 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.005G024000 [exp] 58 / 8e-11 AT1G02816 186 / 1e-60 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 58 / 9e-11 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 52 / 6e-09 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 51 / 2e-08 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 51 / 2e-08 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10036804 pacid=23171282 polypeptide=Lus10036804 locus=Lus10036804.g ID=Lus10036804.BGIv1.0 annot-version=v1.0 ATGGAGAAGGCAGTGGCTAAAGTCAGCAGCTTGAGCATTTATAGTTCCTGGATCTCTAAGCGAGCCAAGGAGGAGATCTCCAATATCACTGCATTGTCAA GCACAGTTGAAGAGAAAGCCATATGGGTCTTCAGCAAGCTAAAAGGAAAGCAACCGAAATGCTTGTCGGATCTGTTGCGAGAGCAGAACTTGCCACCAGG ACTCTTCCCACAGAATATAACCTGCTACGAATTCGACGAGACCACAAGCAAGTTGGTAGTGCACTTGCCTTCTTCTTGCGAGCTTACCTTCAAGGACTCT TCAGTGATCAGGTACTCGGTTCGAGTGAAAGCTGTTCTCGGGAAAGGGAAGCTCGATGGCATAGAGGGAATGAAGACTAAAGTTCTGGTATGGGTTAAGA TCACCAATGTTGCTGTTGAAAGCTACAAGTCCGATAAAGTCTGGTTTACTACTGCTGGTGTCAAGAAGTCTAGACTGAAAACTCAGTACGAAGAATTCTG A
AA sequence Show only first row Show all	>Lus10036804 pacid=23171282 polypeptide=Lus10036804 locus=Lus10036804.g ID=Lus10036804.BGIv1.0 annot-version=v1.0 MEKAVAKVSSLSIYSSWISKRAKEEISNITALSSTVEEKAIWVFSKLKGKQPKCLSDLLREQNLPPGLFPQNITCYEFDETTSKLVVHLPSSCELTFKDS SVIRYSVRVKAVLGKGKLDGIEGMKTKVLVWVKITNVAVESYKSDKVWFTTAGVKKSRLKTQYEEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	0	1
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	1.4	0.9910
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	2.0	0.9897
					Lus10024349 [exp]	2.0	0.9822
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	3.0	0.9841
AT5G14020			Endosomal targeting BRO1-like ...		Lus10031997 [exp]	3.5	0.9789
AT2G32970			unknown protein		Lus10030016 [exp]	3.7	0.9786
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	4.5	0.9805
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10033939 [exp]	4.9	0.9786
AT2G39180		CCR2, ATCRR2	CRINKLY4 related 2 (.1)		Lus10036524 [exp]	6.2	0.9726
AT3G24450			Heavy metal transport/detoxifi...		Lus10017730 [exp]	6.9	0.9675

Compare expression of checked genes

Lus10036804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.