Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03370 355 / 7e-119 Glycosyltransferase family 61 protein (.1) AT2G03360 350 / 7e-117 Glycosyltransferase family 61 protein (.1.2) AT2G41640 269 / 1e-84 Glycosyltransferase family 61 protein (.1.2) AT3G57380 253 / 9e-79 Glycosyltransferase family 61 protein (.1) AT3G10320 246 / 4e-76 Glycosyltransferase family 61 protein (.1) AT3G18180 177 / 3e-50 Glycosyltransferase family 61 protein (.1) AT3G18170 168 / 2e-47 Glycosyltransferase family 61 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037123 [exp] 513 / 0 AT2G03370 246 / 2e-77 Glycosyltransferase family 61 protein (.1) Lus10031057 [exp] 268 / 2e-83 AT2G41640 543 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10035441 [exp] 259 / 7e-81 AT2G41640 560 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10018048 [exp] 258 / 5e-80 AT2G41640 569 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10018046 [exp] 241 / 4e-74 AT3G10320 530 / 0.0 Glycosyltransferase family 61 protein (.1) Lus10036003 [exp] 170 / 8e-47 AT3G18180 360 / 2e-119 Glycosyltransferase family 61 protein (.1) Lus10016707 [exp] 169 / 2e-46 AT3G18180 367 / 3e-122 Glycosyltransferase family 61 protein (.1) Lus10032460 [exp] 166 / 1e-45 AT3G18180 308 / 2e-100 Glycosyltransferase family 61 protein (.1) Lus10037124 [exp] 146 / 9e-43 AT2G03360 77 / 4e-18 Glycosyltransferase family 61 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G162200 [exp] 378 / 9e-128 AT2G03360 407 / 3e-139 Glycosyltransferase family 61 protein (.1.2) Potri.008G092700 [exp] 338 / 4e-112 AT2G03360 377 / 1e-127 Glycosyltransferase family 61 protein (.1.2) Potri.010G162100 [exp] 322 / 2e-105 AT2G03360 371 / 1e-124 Glycosyltransferase family 61 protein (.1.2) Potri.006G048500 [exp] 260 / 4e-81 AT2G41640 604 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.016G057000 [exp] 251 / 2e-77 AT2G41640 584 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.012G051500 [exp] 182 / 5e-51 AT3G18170 451 / 1e-155 Glycosyltransferase family 61 protein (.1) Potri.015G042300 [exp] 173 / 6e-48 AT3G18170 438 / 1e-150 Glycosyltransferase family 61 protein (.1) Potri.015G042200 [exp] 167 / 3e-46 AT3G18180 441 / 3e-151 Glycosyltransferase family 61 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [flax] [poplar] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Lus10036806 pacid=23171150 polypeptide=Lus10036806 locus=Lus10036806.g ID=Lus10036806.BGIv1.0 annot-version=v1.0 ATGAGGCCTCCAATCAAGCTGAAGCGTTATTCCGATATTGATTGTAAGATCGTTCCTTACTGGGTTCTTCCCACCTTGTTATTCTTGTCTATGTTGCTCA TCGTCAACACGCCATCGTTTTTGCCGCTTTGGTTCGGCTCTTTCTCGTCTCCACCTGGAGGATTCACCTGCGATAGGTCCAACCAAATATACGACCTATG CAACATCACTGGGCCCACAGTACTGGACACCACCACCTCCACATTCTACACCTTCGGCCCACCAGCGGTCCAGAAAATCAAGCCTTACCCAAGAAAGCAA GACTCCTTCTCAATGAGCCTGGTCCAGGAACTGACGATAGCGTCCGGCCCAATAACAGACCCAACATCAACGTGTCAAGCCCGTCGCAGCGACTTCCCGG CAGTGGTATTCAGTGCCGGCGGGTACACCGGAAACTTCTTCCACGACTTCAGCGAAGGATTCATCCCTCTCTTCATCACCGTCGGCACGCTCTTCGCCGA CCGTCGTGACTTCGTCCTCGTCGTCTACGAAGCTCATGACGGGTGGATCAGGAAGTACTCCAACCTCCTCCAGTACTTCACCAGGCATCCGATCGTCTTC ATCAGCAATGGCACGAACGTCAACGCGTCTGACATCACGCACTGCTTCGGATCCGCCGTCGTCGGGCTGATCTCCCACGGGATGCTCACGGTAAACCCTA GCTTAATCCCCGGATCCTTAAGCCTCATTAATTTTCGCGACCTGCTGGAAGAAGCCTATGGGACCTGGGTCAGATCTGGGATCTCCGACCCGGCCCAACC CAATAATAATAGTGGCACTGGATCAATGGCGATTGGGGCAAGATCAGACGGATCTGGACCGCGGAGGCCGAGGATGGTGCTGATAAGCAGGCCGAAGCGG GTTGGGAGGGCAATGTTGAACGAGGAGGAGGTAAGGGTGGCGGCGGAAGAGGTGGGATTCGAGGTGGTGATGTTCCAGCCGACTGGGAAGACGGCGGTGC GGGAGGCGTACAAGCTGATGGATTCGGCAGACGCGATGGTCGGAGTGCACGGGGCGGGCATGACGCACCTGCTGTTTATGCGGCCGGGTGCGGCGTTTGT GCAAGTGGTGCCTCTGGCGGCGGAGTGGGCAGCGGAGGTGTGCTACGGGAGTCCGGCTAAGGCGATGGGGCTGCAGTATAAGGAGTATAGAATTGCGGCA AACGAGAGCAGTCTGGCGGAGAAGTACGGAATTGATAGCATGGCGGTGAAGGATCCGACGGCTTTCGGAGGTAAAGGTTGGGGGAAGATGAAGACGTATT TGAGGAAGCAAGATGTGAGGATTGATTTGGTTCGGTTTAGGGTTTATTTGGAGGAAGCTTATCAGAAGGCCTTGGCATTCATGAACACAAAAGAGTAG
AA sequence Show only first row Show all	>Lus10036806 pacid=23171150 polypeptide=Lus10036806 locus=Lus10036806.g ID=Lus10036806.BGIv1.0 annot-version=v1.0 MRPPIKLKRYSDIDCKIVPYWVLPTLLFLSMLLIVNTPSFLPLWFGSFSSPPGGFTCDRSNQIYDLCNITGPTVLDTTTSTFYTFGPPAVQKIKPYPRKQ DSFSMSLVQELTIASGPITDPTSTCQARRSDFPAVVFSAGGYTGNFFHDFSEGFIPLFITVGTLFADRRDFVLVVYEAHDGWIRKYSNLLQYFTRHPIVF ISNGTNVNASDITHCFGSAVVGLISHGMLTVNPSLIPGSLSLINFRDLLEEAYGTWVRSGISDPAQPNNNSGTGSMAIGARSDGSGPRRPRMVLISRPKR VGRAMLNEEEVRVAAEEVGFEVVMFQPTGKTAVREAYKLMDSADAMVGVHGAGMTHLLFMRPGAAFVQVVPLAAEWAAEVCYGSPAKAMGLQYKEYRIAA NESSLAEKYGIDSMAVKDPTAFGGKGWGKMKTYLRKQDVRIDLVRFRVYLEEAYQKALAFMNTKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03370			Glycosyltransferase family 61 ...		Lus10036806 [exp]	0	1
AT1G49410		TOM6	translocase of the outer mitoc...		Lus10020801 [exp]	13.3	0.8784
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10026697 [exp]	19.3	0.8716
AT4G38790			ER lumen protein retaining rec...		Lus10026285 [exp]	24.4	0.7560
AT4G37580		UNS2, COP3, HLS...	UNUSUAL SUGAR RESPONSE 2, HOOK...		Lus10016904 [exp]	26.3	0.8674
					Lus10014949 [exp]	29.1	0.8650
					Lus10038209 [exp]	29.8	0.8664
AT2G48020			Major facilitator superfamily ...		Lus10027977 [exp]	32.4	0.8646
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000794 [exp]	36.0	0.8644
AT5G09550			GDP dissociation inhibitor fam...		Lus10035634 [exp]	37.0	0.8610
AT2G27250		AtCLV3, CLV3	CLAVATA3 (.1.2.3)		Lus10013340 [exp]	45.4	0.8593

Compare expression of checked genes

Lus10036806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.