Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69360 153 / 2e-38 Plant protein of unknown function (DUF863) (.1) AT1G26620 119 / 2e-27 Plant protein of unknown function (DUF863) (.1) AT1G13940 97 / 3e-20 Plant protein of unknown function (DUF863) (.1) AT5G67390 51 / 4e-07 unknown protein AT5G61300 49 / 1e-05 unknown protein AT5G07790 47 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037122 [exp] 1200 / 0 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1) Lus10030419 [exp] 302 / 4e-89 AT1G13940 397 / 1e-121 Plant protein of unknown function (DUF863) (.1) Lus10026640 [exp] 299 / 4e-89 AT1G13940 323 / 7e-96 Plant protein of unknown function (DUF863) (.1) Lus10019291 [exp] 48 / 6e-06 AT5G67390 95 / 2e-24 unknown protein Lus10011531 [exp] 47 / 1e-05 AT5G67390 97 / 3e-25 unknown protein Lus10011080 [exp] 47 / 1e-05 AT5G67390 91 / 7e-23 unknown protein Lus10021644 [exp] 45 / 0.0002 AT1G13940 105 / 5e-23 Plant protein of unknown function (DUF863) (.1) Lus10034722 [exp] 45 / 0.0003 AT1G13940 106 / 3e-23 Plant protein of unknown function (DUF863) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G092800 [exp] 295 / 3e-86 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 289 / 4e-84 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1) Potri.017G088900 [exp] 74 / 4e-13 AT1G69360 152 / 2e-37 Plant protein of unknown function (DUF863) (.1) Potri.004G125900 [exp] 72 / 1e-12 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1) Potri.007G053300 [exp] 50 / 1e-06 AT5G67390 100 / 3e-26 unknown protein Potri.018G090000 [exp] 49 / 7e-06 AT5G57340 72 / 8e-15 unknown protein Potri.003G112000 [exp] 49 / 2e-05 AT1G62530 109 / 4e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) Potri.006G262600 [exp] 48 / 2e-05 AT1G13940 53 / 4e-07 Plant protein of unknown function (DUF863) (.1) Potri.005G145800 [exp] 46 / 3e-05 AT5G67390 87 / 1e-21 unknown protein Potri.018G020800 [exp] 47 / 4e-05 AT1G69360 54 / 2e-07 Plant protein of unknown function (DUF863) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05904 [flax] [poplar] DUF863 Plant protein of unknown function (DUF863)
Representative CDS sequence Show only first row Show all	>Lus10036807 pacid=23171189 polypeptide=Lus10036807 locus=Lus10036807.g ID=Lus10036807.BGIv1.0 annot-version=v1.0 ATGTACAGGACATTGATCACTTTGTTTTGTCTCCTGCCAGGTATGGGAACAAAAGTGCAGCTCGAAAGTTACTTTCCGGGGATTCCTCGAGTTAGGGATG TTGCTGATGATTCCAACAGTTATAACTGCCTGGTATATTCTGGAGATAAAACCTTCACAAATGGTCAATACTACAATGGTCACTTACATTCGGGGCATGA TAAGGACTTAGTCAAGCGAACGATGCTCGAGCACGAAGCTATGTTCAGGAACCAGCTATATGAACTCCACCGCCTCTACAGAATACAAAGGGACATGATG AATGAAGTTAAGATGAATGGAAGTACTTTAAGGAATGTGGAGATGTTGGAGTCTAGGCCTACAAAGGCGAGGAGAAAGATGTTTGATCTTCGTCTTCCGG CTGATGAGTACATAGATACAGAAGATGTGAAACCGTTAGCCAAGGGGAATCCTTGCAATTCGAGCAAGAACAGTTTCGACCAGAATAATTGCCAGGTTGA TCTTTCACTGCCGGGACCACGTTCGAGGGTCAAGACTAGCATGGCTGATTTGAATGAACCGATTGTGATCGAAGACACCGGTACCTCAGAACATACTTTT CATGCAAAAATTAGAGGGACAAAATTCAATGATAAGCAGAAGTCGAGACTTGAGTTTTCTTCAGAGGAGATATGGCAGAAGCTTCGTCGTGGGAGTGATG ACAATTCTAGTAATTGGAATCGAGAAGCGGTTATTTCTTCCAGGATATCAACTCAACATAAGTTCGTTCCGGATTCGAGCAAGCCAAACAGCATGTTATA TCAGACTGCAGTGCATTTGAACTCATCTTCAGCATTGAGGCAAAGTTCTGATTTGTCAGCTCAAAGTATCGGAATTTTTGGAGATCGGTGGAACTGTAAC AACATCTCTACATCGAACCAGAAGTTCGGAAGTGAAAGGTCTTATCAAAACGGATATTATTCCCATAAAATTTCTGCAGGGTGTAAGGAGCTACAGCATT TGACTCCTCCTGGAAGCTACGATCATTTGAACTGGAGCACTGCTGACAATTTAGCCACTGATCACCTAATCAAGCATGGTTCGGAAAAGTTCTATCGCGG TTCCTCAAATAAGGCAGCTAGCCGGCGTGGTATTGAGGTCATAGATTTGGAAAGGAATGATGATAACAATGGTTCTTGGGCTATATCGGCTCCCCAACAC AAAGAATCGTTCTTGGAAGGCTCCACGGGCTGCCATCGGAAGATTCTTGGCTTTCCGATTTTTCAGGATGCACATGTACCTAAGAAAGAGACATCTTATT TTACCTTTACTTCACTCTCAATTCCTCACCGACCCGAAGTGAAGGTTGGAAGCAAGGTGAATAAGTTACAATTCGATATGAACATTCCCTCAGATGAAAT GGGGATTGCTACAGAGGAAAAAGATGCCAAAGCTTCCAACTTTAGGTGTGAGATTGACCTGAACTCTTGTATAAGTGAAGATGAAGCTTCTTTACTACCT TCTGTTCCGGACTCGAAGAAGAAGAAATTTACGGGGATCGATTTGGAAGCTCCGATAGTTCCTGAGGGCGAGGAGGAGGAGGTTTCTGTTCATGGCGGAG AATGCATGGCGAGGGATCATGAAGAACATTCATCAATCAGAGTAGCAGCTGAGGCAATCATTGCGATCTCGTTGTCAGCTTCCCAAGATCAATGGCCCGG ATCGAATTGTAGCCTTCCTGAAGAAGTGTCTGCAGCACCAGATCCTCTTCGTTGGTTTGCAGACATTATCACTGCTTGGAAGGTTAGAGACAATGACTCC TCGTCCTTCGAGGAGTTAGATTACTTCGAGTCGATGACATTGAAATTGGCGGAGACTAAAGAAGAGGATTACATTGCAAAACCACTAGTTCCGGAAGGCT TGAAACTGGACAAAACAGGAACCAGCCACACTCAAACTCAAAGGGGTAATGCTCGACGAGGAAGGCAGAGGAGAGATTTCCAAAGGGACATCCTTCCGGG ACTCGGTTCTCTTTCGAGGCATGAAGTGACGGAAGATCTTCAGACATTTGGAGCGCTGATGAGAGCAACAGGTGTTACTTGGCATGCAAGGAACTCGACC AGAAGTGGTTCCGGTAGGGGAAGAAGGCGATCGCTGATGATTTCTCCTCCACCGCCTTGCAATCCGTTGATACAACAACTGAGTTCTGTGGAAGCGGGAT TGGAAGACACAAGCCTGAGAGGTTGGGGGAAAACAACTAGGCGTCCTCGTAGGCAAAGATGCCCGACTGGTAATCTTCCAACTATTCCTGTAACCTGA
AA sequence Show only first row Show all	>Lus10036807 pacid=23171189 polypeptide=Lus10036807 locus=Lus10036807.g ID=Lus10036807.BGIv1.0 annot-version=v1.0 MYRTLITLFCLLPGMGTKVQLESYFPGIPRVRDVADDSNSYNCLVYSGDKTFTNGQYYNGHLHSGHDKDLVKRTMLEHEAMFRNQLYELHRLYRIQRDMM NEVKMNGSTLRNVEMLESRPTKARRKMFDLRLPADEYIDTEDVKPLAKGNPCNSSKNSFDQNNCQVDLSLPGPRSRVKTSMADLNEPIVIEDTGTSEHTF HAKIRGTKFNDKQKSRLEFSSEEIWQKLRRGSDDNSSNWNREAVISSRISTQHKFVPDSSKPNSMLYQTAVHLNSSSALRQSSDLSAQSIGIFGDRWNCN NISTSNQKFGSERSYQNGYYSHKISAGCKELQHLTPPGSYDHLNWSTADNLATDHLIKHGSEKFYRGSSNKAASRRGIEVIDLERNDDNNGSWAISAPQH KESFLEGSTGCHRKILGFPIFQDAHVPKKETSYFTFTSLSIPHRPEVKVGSKVNKLQFDMNIPSDEMGIATEEKDAKASNFRCEIDLNSCISEDEASLLP SVPDSKKKKFTGIDLEAPIVPEGEEEEVSVHGGECMARDHEEHSSIRVAAEAIIAISLSASQDQWPGSNCSLPEEVSAAPDPLRWFADIITAWKVRDNDS SSFEELDYFESMTLKLAETKEEDYIAKPLVPEGLKLDKTGTSHTQTQRGNARRGRQRRDFQRDILPGLGSLSRHEVTEDLQTFGALMRATGVTWHARNST RSGSGRGRRRSLMISPPPPCNPLIQQLSSVEAGLEDTSLRGWGKTTRRPRRQRCPTGNLPTIPVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69360			Plant protein of unknown funct...		Lus10036807 [exp]	0	1
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10015722 [exp]	1.0	0.8796
AT3G59060	bHLH	PIF5, PIL6	PHYTOCHROME-INTERACTING FACTOR...		Lus10029805 [exp]	2.8	0.8213
AT2G17760			Eukaryotic aspartyl protease f...		Lus10041865 [exp]	3.9	0.8021
AT4G19670			RING/U-box superfamily protein...		Lus10036202 [exp]	6.5	0.8175
AT2G28320			Pleckstrin homology (PH) and l...		Lus10016094 [exp]	7.2	0.8043
AT3G49060			U-box domain-containing protei...		Lus10039245 [exp]	9.2	0.7768
AT1G13310			Endosomal targeting BRO1-like ...		Lus10034281 [exp]	10.0	0.7792
AT4G12010			Disease resistance protein (TI...		Lus10015648 [exp]	10.6	0.7803
AT5G65660			hydroxyproline-rich glycoprote...		Lus10032818 [exp]	11.5	0.7914
AT5G36250			Protein phosphatase 2C family ...		Lus10022588 [exp]	11.5	0.7790

Compare expression of checked genes

Lus10036807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.