Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47730 103 / 8e-28 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) AT4G02520 96 / 4e-25 GST2, ATPM24.1, ATGSTF2 glutathione S-transferase PHI 2 (.1) AT1G02920 95 / 6e-25 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1) AT1G02930 94 / 1e-24 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT2G02930 94 / 1e-24 GST16, ATGSTF3 GLUTATHIONE S-TRANSFERASE 16, glutathione S-transferase F3 (.1) AT2G30860 91 / 4e-23 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT1G02950 89 / 1e-22 GST31, ATGSTF4 GLUTATHIONE S-TRANSFERASE 31, glutathione S-transferase F4 (.1.2.3.4) AT1G02940 89 / 3e-22 ATGSTF5 glutathione S-transferase (class phi) 5 (.1) AT3G62760 75 / 4e-17 ATGSTF13 Glutathione S-transferase family protein (.1) AT1G49860 72 / 5e-16 ATGSTF14 glutathione S-transferase (class phi) 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037121 [exp] 162 / 3e-51 AT2G47730 243 / 2e-81 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10030414 [exp] 128 / 9e-38 AT2G47730 267 / 1e-90 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10026643 [exp] 125 / 9e-37 AT2G47730 269 / 2e-91 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10029815 [exp] 100 / 1e-26 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10020735 [exp] 100 / 2e-26 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10020736 [exp] 82 / 1e-19 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10001419 [exp] 78 / 4e-18 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10004151 [exp] 73 / 4e-16 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10029816 [exp] 72 / 6e-16 AT2G30860 308 / 1e-107 glutathione S-transferase PHI 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G207093 [exp] 164 / 4e-52 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207479 [exp] 108 / 4e-30 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 108 / 4e-30 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.014G132200 [exp] 92 / 2e-23 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.002G015100 [exp] 87 / 7e-22 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G207672 [exp] 86 / 3e-21 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.017G138800 [exp] 76 / 2e-17 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G015200 [exp] 71 / 2e-15 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.014G069600 [exp] 43 / 3e-05 AT2G02390 204 / 1e-66 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Potri.004G232600 [exp] 42 / 4e-05 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036808 pacid=23171135 polypeptide=Lus10036808 locus=Lus10036808.g ID=Lus10036808.BGIv1.0 annot-version=v1.0 ATGGCGGCCGCACCAACCATTAAGGTGTACGGAAGCCCTATATCGACGGCTACCCAGAGGGTGTTCGCAACTCTGTACGAGAAAGAGCTCGATTTCGAGT TCATCAAGGTCGACCTTGCCTCTGGCGAGCAAAAGAAGGAGCCTTTCATTTCCCTCAGCCCCTTCTGTCTGGTTCCTGCTTACCAGGAAGGCAACTTGAC CCTCTTTGCAAATGTTGCGGCCAATGAAGCTAAGCTTAACAAGGTTCTAGATGTATACGAGTTGAGGCTGTTGAATTCCAAGTACTTGGGAGGCGACCGG TTCTCGTTGGCTGATCTTCACCACATCCCTAATGTTCATTGCTTGGTCGGGACGCCCACTAAGAAGATCATCGATTCTCATCCGAAAGTCCGCGCTTGGA TTTCTGATGTCACTGCTAGGCCTGCTTGGTCCAAAGTCGTTGCACGTATGAAACAGTGA
AA sequence Show only first row Show all	>Lus10036808 pacid=23171135 polypeptide=Lus10036808 locus=Lus10036808.g ID=Lus10036808.BGIv1.0 annot-version=v1.0 MAAAPTIKVYGSPISTATQRVFATLYEKELDFEFIKVDLASGEQKKEPFISLSPFCLVPAYQEGNLTLFANVAANEAKLNKVLDVYELRLLNSKYLGGDR FSLADLHHIPNVHCLVGTPTKKIIDSHPKVRAWISDVTARPAWSKVVARMKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49860		ATGSTF14	glutathione S-transferase (cla...		Lus10036808 [exp]	0	1
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10010570 [exp]	6.3	0.9691
AT2G01340		At17.1	unknown protein		Lus10036005 [exp]	6.5	0.9795
AT5G56960	bHLH	bHLH041	basic helix-loop-helix (bHLH) ...		Lus10017152 [exp]	8.8	0.9697
AT1G47670			Transmembrane amino acid trans...		Lus10003338 [exp]	10.1	0.9755
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10017522 [exp]	12.6	0.9720
AT5G09360		LAC14	laccase 14 (.1)		Lus10041067 [exp]	12.8	0.9673
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10031100 [exp]	13.9	0.9749
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10039746 [exp]	17.7	0.9690
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	18.0	0.9736
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10014191 [exp]	18.7	0.9670

Compare expression of checked genes

Lus10036808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.