Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69340 897 / 0 appr-1-p processing enzyme family protein (.1) AT2G03390 369 / 2e-119 uvrB/uvrC motif-containing protein (.1.2) AT2G40600 75 / 2e-14 appr-1-p processing enzyme family protein (.1) AT4G35750 58 / 4e-09 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT3G10210 50 / 2e-06 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037119 [exp] 1032 / 0 AT1G69340 966 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10030413 [exp] 914 / 0 AT1G69340 917 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10037120 [exp] 625 / 0 AT2G03390 402 / 8e-141 uvrB/uvrC motif-containing protein (.1.2) Lus10034226 [exp] 76 / 3e-15 AT2G40600 309 / 1e-107 appr-1-p processing enzyme family protein (.1) Lus10034225 [exp] 75 / 7e-15 AT2G40600 286 / 1e-98 appr-1-p processing enzyme family protein (.1) Lus10029039 [exp] 73 / 4e-14 AT2G40600 310 / 3e-108 appr-1-p processing enzyme family protein (.1) Lus10035431 [exp] 64 / 7e-11 AT3G10210 353 / 2e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10031044 [exp] 64 / 7e-11 AT3G10210 353 / 3e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10005640 [exp] 60 / 1e-09 AT4G35750 260 / 6e-89 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G161500 [exp] 932 / 0 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.008G093100 [exp] 922 / 0 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.010G161600 [exp] 414 / 1e-136 AT2G03390 417 / 6e-147 uvrB/uvrC motif-containing protein (.1.2) Potri.013G092700 [exp] 86 / 7e-19 AT2G40600 309 / 1e-107 appr-1-p processing enzyme family protein (.1) Potri.005G246800 [exp] 66 / 6e-12 AT4G35750 282 / 9e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G107300 [exp] 57 / 6e-09 AT4G35750 284 / 1e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.002G014700 [exp] 56 / 2e-08 AT4G35750 296 / 3e-103 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.006G043166 [exp] 56 / 4e-08 AT3G10210 359 / 6e-127 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [flax] [poplar] AAA_lid PF02151 [flax] [poplar] UVR UvrB/uvrC motif CL0671 [flax] [poplar] PF08755 [flax] [poplar] YccV-like Hemimethylated DNA-binding protein YccV like CL0223 [flax] [poplar] MACRO PF01661 [flax] [poplar] Macro Macro domain
Representative CDS sequence Show only first row Show all	>Lus10036809 pacid=23171030 polypeptide=Lus10036809 locus=Lus10036809.g ID=Lus10036809.BGIv1.0 annot-version=v1.0 ATGTACAGGGGTGTGTCTTCGGCCGCCACCACGCGTGGTGGTTCTCCCACGGACAGTGGGGATTCTGTTGTGACTTTAGATCAAGTTCCACGATGGAGCG ATGTAGAGAGTAGGCCCACTTATGGTTATGATAACATGGATCCTTCATTTTCAAATCCATTCTTTCCTGATCCTTTAGCATCTAGTCCTGATGGGGATAC CAATGGGAATGGAGTGGTATCGAGATTCCCGGTTGACCATGAAATCAACTCCAAGATACATCTATGGAGAGGAAACCCGTGGAATCTTGAGGTTGATGCG GTAGTGAATTCGACAAACGAGAACCTCGACGAAGCACACAGCAGCACTGGTCTGCATGCTGCGGCTGGACCCGGTCTTGCAGAGGAATGTGCAACAATGG GTGGATGCAGAACAGGAATGGCAAAAGTTACTAATGCATATGATCTTCCTGCTAGGAGAGTTATTCATACCGTCGGTCCAAAATATGCCGTGAAGTATCA CACTGCTGCCGAGAACGCCTTGAGCCACTGTTATAGAGCTTGCCTTGAGTTACTCATTGACAATGAGCTTGAAAGCATTGCTATGGGATGTATATACACT GAAGCTAAAAACTATCCCCGTGAACCAGCTGCACATGTTGCTATAAGAACTGTTAGGCGTTTTCTTGAGAAGCAGAGGGATAAGATTACAGCAGTTGTAT TTTGTACCACCACCTCCACTGATACTGAAATATATAAAAGGCTGCTGCCACTCTACTTTCCGCGAGATAAACATGAGGAGGAGGTGGCCATATCAAAGCT TCCTGCTGATGTTGGGGATGAGAATGGAGAGACGACAATAGATGAACGCAAAATCAGAATTAAGCCTTTGCCCAAGAAAAACATACCGAAACCTCTTGCA ACTCCAGAAGAGCTACCCGTTAACGATGTGAGCTTGGTGCGAAGAGACTCTACATATTTGGATTCTTATTTGGATCCAGCGTTCATGTCCTTAATAAAGG ATCCAGATCAGAGACGCAGGGAGCAGTGGGAAAAAACTGCTCAAGCACAAAGTGGATTTAACTTCGCCAAGCTGCTTGGTTTTGGCGACCTCGGTGGTCC TCCTTTGTCTGCTGCTGAAGAGTACTCTTTGCATTCTCGATATCTCGCTAAAGCCAACTCTCTTAATCTCTCCGAAATTGCAGAGATGAAAATTGTTTAC CGTGGTGGAGTAGACAGCGAAGGCCGCCCAGTAATGGTTGTTGTGGGAGCACACTTCTTGCTAAGATGTCTTGATCTGGAGAGATTTGTGCTTCACGTTA TCAAGGAATTCGAGCCTTTGATCCAGAAGCCGTTTTCTATTGTGTATTTCCATTCTGCAGCATCCTTACAGCTGCAACCGGACTTGGGATTCATGGGGAA ATTACAACAAATACTTGGCCGAAAACACCAGAGAAATCTCCATGCAATCTATGTCCTCCATCCGACATTGCATCTAAAAGCGGTAGTTCTCGGGATGCAA ATGCTCGTAGATAACGTGACATGGAAGAAGGTTGTATACGTTGACAGGCTTCTGCAACTCTTCAAATACGTCCCTCGTGAGCAATTGACCATCCCCGATT TCGTCTTCCAGCATGACTTGGAAGTCAACGGAGGGAAGGGTCTTATCGTAGACCCGAGAACAAAATATGTCCGTTTTCTAGTTAGGCGTGACTGGCAGAT GTCAGCATCTGAACGGGGGACGCACGTTAATAACGATGGACTCGTATGCAGAAAGACGAAATCCAGTCCCTTCTCTGGTATCCAAAAGTTTCTCTTGTTC CCAATCCAAACATTTGTGAAGCAGACTAAAAGCAGCTCTCTTTATAATAAACCTGAGGTTGATTCAGGCCCCGACAGTTCACCGGTGAACTCTTCTGGCG ATCACCAGCGATATTTTCCCAAACTGGGTTTAGCTTCGATCTTTTCGCCACAGGTTTTCATCCACTATATCCGATTGATTGGTCAAATCATGCTCCGAGG CCAAGGTCTGTCACCAGGCACTCTAACAACGTACGGTAACTGTGGGATTTCCGCAAGGATTCCATGTTGGGGGAGGCAATTTAAGCTTGAATGGAAGACC ACTAGATTACTCTCCGGATTTGGTATGGATTTGGCGAGCAAGTGTAATAATAATAATGTAATGGGTAGAAGGAGTTTGAGAGTTGAAGCTGGATGGCTGT TCAGTGGCAACAGTGGGAATCAAGACTCGAATTCGGGTGCAAGACTCGAGCAAAGCGAGAGCGTGAATGAGGACATTCTCATCTTCTTCTTCCAGCTTGA TCTCGCAACTCGTGTTCAGTGTGCTCTGAACATGGAACAATATGACGTTGCTCAACAGCTCAGAAACAAGCTTACTGAGGTTGAGCAAGACATTGTGAAG CGACGGGACACCACAAGAGGAACATCCTCGAAGAGTGAAGCGCAAGACAAGGCGATTAATATGATAAGACTACGTGCGGACTTGCAGAATGCGATTGAGA AGGAGGATTATGCTCTGGCAGCTGAGTTTAGGGATCAGATCTCTAAACTGGAGAAAGAATCTTTGGCTGCATCTGCTGAAGCCTTGGCATATGCAAATGT ACAGTATGCATTTCGTTTAGGGCAGAAAGCGAGGCACAAAATCTACGGTTATAGAGCAGTGATTTGTGGGATGGATCCTGTTTGCTGCGAGTCAAGCTCC TGGATGGAAGCTGCAAAGACTCAGAAGCTGGATCGAGGTCCTAATCAACCGTTTTACCAGGTTTTGGTTAATGTAAATGAAGACCCAAATCTACTAGTCA CATACGTTGCTGAGGATAGTTTGATAGCTCCAGAAAAACCTGACTTGGAAAGGTTCGATCATCCCTATGCATCCTTCTTATTCTATGGAGTGGATACAGC AGGAGACTTCATCCCGGTCAAGCAACTACGCGAGAAGTTCAATAGACCACGCCATGAAGTGCCGACAGATCCACCGGATGAGAACAGTGGAAGCAGCCCT TGA
AA sequence Show only first row Show all	>Lus10036809 pacid=23171030 polypeptide=Lus10036809 locus=Lus10036809.g ID=Lus10036809.BGIv1.0 annot-version=v1.0 MYRGVSSAATTRGGSPTDSGDSVVTLDQVPRWSDVESRPTYGYDNMDPSFSNPFFPDPLASSPDGDTNGNGVVSRFPVDHEINSKIHLWRGNPWNLEVDA VVNSTNENLDEAHSSTGLHAAAGPGLAEECATMGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRACLELLIDNELESIAMGCIYT EAKNYPREPAAHVAIRTVRRFLEKQRDKITAVVFCTTTSTDTEIYKRLLPLYFPRDKHEEEVAISKLPADVGDENGETTIDERKIRIKPLPKKNIPKPLA TPEELPVNDVSLVRRDSTYLDSYLDPAFMSLIKDPDQRRREQWEKTAQAQSGFNFAKLLGFGDLGGPPLSAAEEYSLHSRYLAKANSLNLSEIAEMKIVY RGGVDSEGRPVMVVVGAHFLLRCLDLERFVLHVIKEFEPLIQKPFSIVYFHSAASLQLQPDLGFMGKLQQILGRKHQRNLHAIYVLHPTLHLKAVVLGMQ MLVDNVTWKKVVYVDRLLQLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVRFLVRRDWQMSASERGTHVNNDGLVCRKTKSSPFSGIQKFLLF PIQTFVKQTKSSSLYNKPEVDSGPDSSPVNSSGDHQRYFPKLGLASIFSPQVFIHYIRLIGQIMLRGQGLSPGTLTTYGNCGISARIPCWGRQFKLEWKT TRLLSGFGMDLASKCNNNNVMGRRSLRVEAGWLFSGNSGNQDSNSGARLEQSESVNEDILIFFFQLDLATRVQCALNMEQYDVAQQLRNKLTEVEQDIVK RRDTTRGTSSKSEAQDKAINMIRLRADLQNAIEKEDYALAAEFRDQISKLEKESLAASAEALAYANVQYAFRLGQKARHKIYGYRAVICGMDPVCCESSS WMEAAKTQKLDRGPNQPFYQVLVNVNEDPNLLVTYVAEDSLIAPEKPDLERFDHPYASFLFYGVDTAGDFIPVKQLREKFNRPRHEVPTDPPDENSGSSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69340			appr-1-p processing enzyme fam...		Lus10036809 [exp]	0	1
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10023696 [exp]	2.2	0.8810
AT4G32272			Nucleotide/sugar transporter f...		Lus10006645 [exp]	3.2	0.8925
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	3.9	0.8924
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	4.6	0.8926
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10041543 [exp]	4.9	0.8909
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	6.0	0.8802
AT1G13990			unknown protein		Lus10036787 [exp]	6.3	0.8753
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10016320 [exp]	6.9	0.8544
AT5G61670			unknown protein		Lus10016713 [exp]	7.9	0.8758
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10001975 [exp]	9.2	0.8455

Compare expression of checked genes

Lus10036809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.