Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03420 168 / 8e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037118 [exp] 269 / 3e-93 AT2G03420 179 / 7e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G161400 [exp] 190 / 3e-62 AT2G03420 160 / 2e-50 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036810 pacid=23171229 polypeptide=Lus10036810 locus=Lus10036810.g ID=Lus10036810.BGIv1.0 annot-version=v1.0 ATGAACTCCCTCTCCCAATCTTCCCCTTTCCAGATTTCTTCAGCCAAATTCACACTAGTCCCTAAATCACCCAGCTCTCAGAAGCAGCTCTCGGTCTCAG TTGCTTGCTCCTGCAAGTCACCCACGAGCTCCAATGGCTTCTCCAAGTATTTAGTAGCTACTGCTGCTGCTGTCGCCATTCTCCTCTCTGCAACGCCAGC AAAAGCTGGATTGATGTCAGGGTTCTCTGGGATAGAATCAGTACCAGGTCCTGAACTGCCTAAGATGGACTTCCTCACTCGTTTCAATGATGAGAACCAG AAGAAGTATGCTGAGGATGATGCAAGATTCAAATCATCTCCTATTCTCAAGGAGCTGCTTGAGAAATCCAAGCTCAATCAAGAGAAGAACAAGAAGGAGA TACAGGACAAGTACTGCATTCGAGGGGCGGAATGGGGGGTTGGTGATTGCTCAGCAGAGGGTATGACTCCACAGCAGAAAGATGAGTTCATAGCCATGCT GAAACAGAAGGCTGGAATCAAAGAATGA
AA sequence Show only first row Show all	>Lus10036810 pacid=23171229 polypeptide=Lus10036810 locus=Lus10036810.g ID=Lus10036810.BGIv1.0 annot-version=v1.0 MNSLSQSSPFQISSAKFTLVPKSPSSQKQLSVSVACSCKSPTSSNGFSKYLVATAAAVAILLSATPAKAGLMSGFSGIESVPGPELPKMDFLTRFNDENQ KKYAEDDARFKSSPILKELLEKSKLNQEKNKKEIQDKYCIRGAEWGVGDCSAEGMTPQQKDEFIAMLKQKAGIKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03420			unknown protein		Lus10036810 [exp]	0	1
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002906 [exp]	1.4	0.9592
AT3G17930			unknown protein		Lus10026379 [exp]	3.5	0.9468
AT3G18870			Mitochondrial transcription te...		Lus10042342 [exp]	3.6	0.9302
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10000828 [exp]	4.0	0.9511
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Lus10027129 [exp]	4.5	0.9418
AT1G12250			Pentapeptide repeat-containing...		Lus10024602 [exp]	4.9	0.9435
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10002180 [exp]	10.0	0.9328
AT1G74410			RING/U-box superfamily protein...		Lus10001654 [exp]	10.2	0.9301
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10041956 [exp]	10.5	0.9311
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10042461 [exp]	10.7	0.9402

Compare expression of checked genes

Lus10036810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.