Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69170 186 / 2e-54 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G02065 132 / 9e-35 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT5G43270 130 / 1e-33 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT5G50570 125 / 3e-32 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) AT5G50670 125 / 3e-32 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT2G42200 124 / 1e-31 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT3G60030 127 / 2e-31 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G27370 124 / 2e-31 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT2G33810 117 / 2e-31 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT2G47070 126 / 5e-31 SBP SPL1 squamosa promoter binding protein-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000643 [exp] 761 / 0 AT1G69170 192 / 4e-55 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10023818 [exp] 149 / 7e-41 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10021141 [exp] 152 / 8e-41 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10007984 [exp] 148 / 2e-39 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021034 [exp] 141 / 7e-38 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10016275 [exp] 135 / 6e-36 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10012020 [exp] 137 / 1e-35 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1) Lus10021614 [exp] 136 / 1e-35 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10011348 [exp] 129 / 5e-34 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097900 [exp] 269 / 5e-85 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.010G154300 [exp] 243 / 6e-75 AT1G69170 152 / 3e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.015G060400 [exp] 165 / 3e-45 AT1G69170 153 / 4e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.015G098900 [exp] 134 / 5e-35 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.012G100700 [exp] 131 / 1e-34 AT5G50570 222 / 6e-70 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.016G048500 [exp] 127 / 8e-33 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.014G057800 [exp] 125 / 7e-32 AT1G27370 137 / 3e-36 squamosa promoter binding protein-like 10 (.1.2.3.4) Potri.014G057700 [exp] 124 / 8e-32 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.001G058600 [exp] 124 / 1e-31 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.018G149900 [exp] 125 / 2e-31 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10036812 pacid=23171351 polypeptide=Lus10036812 locus=Lus10036812.g ID=Lus10036812.BGIv1.0 annot-version=v1.0 ATGGAGCCATGGAGTTGTGCTCCAGAAGGGAAAGCTAGTTTCTTCACCAACCATGAAGTAGATTTTCCAGCTGATATTGATAGCCTGGAGTTTGTTGATC TAGGGTTTCATGATGATATGCTGAGAAGTCCTTGCTTTGGTAATGGTGGTGGTAGTAGTGATGAGATTGGTGGTTTTGATTCTCATAACTTTGCTGCTCC GAATTCCCCGCTGGATTCTGGATCGATCGAACATTCGAGTTCCCTCGCGGAGTCCAACATCCCGGATTCGTCACTTATCATCAATTTGAATCTGGGGAGG TTTTCTGAGAATGGTGGTGAGTTTTGCCAGAAGAGGTCACTGCTGGACTTTGTGGAGCCTGGCTTTCAGGCGAAGAGAGCTCGAATTGTGACTCCGTTGT GCCAAGTCTATGGCTGTAACAAGGATCTTAGCTTGTTGAAGGATTATCATCAGAGGCATAGAGTTTGTGAGGTCCACACTAAAACACCTACTGTGGTTGT TAATGGGATTCAACAGAGGTTTTGTCAACAATGCAGCAGGTTCCATCTGCTATCCGAGTTTGACGATGGCAAGCGTAGCTGTCGAAAACGCCTAGCTGGC CACAACGAGCGGAGGAGGAAGCCTAATTTCGGTGGCCTCTCTAGCAATGGCTACAAGTTACTGCAACAATATCAAGCAGAAGGCGCTAGTTTTGTTGGGG CTCCTTTGCCTAAGAGATCATCATTTCTGTTCCAAGATATGTTCACAGTACCACATTGTAATCTGCGTACCGAAACTAACTGGTACGGTCATTCTTCGTT CAAGGAAAGGTCGTGTTGCAACACCGAGACAGCATATCCATATAATGACCAGTGGCTGTCAACAAATCCATTCTCTTACCACCACGGTGATGGTTCGAAC CGTCACTCTAGCCGTGCTCTCTCTCTTCTGTCAGATGAATCTCAGCACTACATCGGCCATGGTTCAGTAGGAGGATATCCGATGGCTAAGCCCTTCCCCA GCTTAGGTTCATTTGGAAAATGCGAGTTCTGCTCATGTACTACAAATCCCATCCATGTCGTAAACCATCATCTTGAACATGACCCCGCTGAGTTTCACAG GAAAAGACATGGACATTTCCCTCCTCACAGCATCCCGGATCCAGACTTGAAAAAGAATCACCACGGCTCTCCTGAAAACGAACGTACAGTCGACTTGCTT CAGCTTTCGTCGCATCTTCAACGAGTTGAACAGCAGAGGAGCCTCGTACAAATGAAGAACGAGACCGAGGATCTGTTTCATTTCCTAACTACTGAAGGCC TTAGAGTGAAAAAATAG
AA sequence Show only first row Show all	>Lus10036812 pacid=23171351 polypeptide=Lus10036812 locus=Lus10036812.g ID=Lus10036812.BGIv1.0 annot-version=v1.0 MEPWSCAPEGKASFFTNHEVDFPADIDSLEFVDLGFHDDMLRSPCFGNGGGSSDEIGGFDSHNFAAPNSPLDSGSIEHSSSLAESNIPDSSLIINLNLGR FSENGGEFCQKRSLLDFVEPGFQAKRARIVTPLCQVYGCNKDLSLLKDYHQRHRVCEVHTKTPTVVVNGIQQRFCQQCSRFHLLSEFDDGKRSCRKRLAG HNERRRKPNFGGLSSNGYKLLQQYQAEGASFVGAPLPKRSSFLFQDMFTVPHCNLRTETNWYGHSSFKERSCCNTETAYPYNDQWLSTNPFSYHHGDGSN RHSSRALSLLSDESQHYIGHGSVGGYPMAKPFPSLGSFGKCEFCSCTTNPIHVVNHHLEHDPAEFHRKRHGHFPPHSIPDPDLKKNHHGSPENERTVDLL QLSSHLQRVEQQRSLVQMKNETEDLFHFLTTEGLRVKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10036812 [exp]	0	1
AT5G62165	MADS	FYF, AGL42	FOREVER YOUNG FLOWER, AGAMOUS-...		Lus10027404 [exp]	4.2	0.8257
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10002382 [exp]	6.3	0.7880
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10011863 [exp]	8.0	0.8148
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10022797 [exp]	10.7	0.8104
AT1G80870			Protein kinase superfamily pro...		Lus10026069 [exp]	16.1	0.7655
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10014443 [exp]	17.4	0.7896
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10002468 [exp]	17.7	0.7142
AT3G11090	AS2	LBD21	LOB domain-containing protein ...		Lus10028986 [exp]	20.7	0.7534
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10013476 [exp]	25.8	0.7642
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10015537 [exp]	26.4	0.7312

Compare expression of checked genes

Lus10036812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.