Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69160 56 / 8e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019172 [exp] 441 / 3e-157 AT1G69160 94 / 6e-22 unknown protein Lus10004639 [exp] 112 / 4e-28 AT1G69160 55 / 4e-08 unknown protein Lus10026677 [exp] 109 / 7e-28 AT1G69160 62 / 9e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G098200 [exp] 115 / 5e-30 AT1G69160 134 / 2e-36 unknown protein Potri.010G154200 [exp] 111 / 3e-28 AT1G69160 114 / 2e-29 unknown protein Potri.006G222700 [exp] 42 / 0.0005 AT1G54200 114 / 4e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036813 pacid=23171074 polypeptide=Lus10036813 locus=Lus10036813.g ID=Lus10036813.BGIv1.0 annot-version=v1.0 ATGTCTACCACAGCATCCAAGCTCTTCAAGAAGCCAGTCCACCACAGAACCAACTCCGACGAAGCATCTAAGTACTTCTCAGCCTACAACGAGGACCACC CATCTAGCCTCACCACCACCAAAACCAGAGTATCCTCAGGTTCTGCTGGCAGAATGAGCCTAGACCTCCCTACAAGCAGCACCGGTATCGAACCATTCGA TCATCATCACACGGTGAAAATTCGAAACCAAATTCTGAAGGAAAAGGGTCATATTGATACCAGCACTAGTACTAGTAATAGTACTAAACAACACAAGCAG CCAAGCTCTCCGGGAGGGAGGCTGGCCAGCTTCCTGAACACCCTGTTCCACCAGGCGTCCAAGAAGAATAAGAAGAAGAAATCGACAGCCAACGACGAAG ATCACGAGAGCCCCACAGGGGGAGGGATGATCAGGAGGAAGAGGAGGAGCAGCATTAGCCATTTCACAAGGTCAATTACTGATACGAGGTCATGGTACTC TTCCAACCATGTACCGGTACTAGTACCGGCATCAAGTACTAGTACTAGTACTATTGCTTGCACTCCTACTAAGAGCGGATACAAGAATTTGAGGAGCCTT ATTGCTGCTTCGGATCAGAATCAGAAGGTTGGTGGTGTAGAAAAGGGTAGTTGTTGTTGTAAAGATTCATGGTTGGATGAGAAGTGTGGCAATCCTGATG AGATCAGGATTGGAGATTGTGGTGGTGGTGGTGGTGAGGATGGTTGTGAGAGTGATTCAAGCTCTGATTTGTTTGAGCTGCAGATTTTTGATTTTGATGC CTACTCCAATGGCTTGCCTGTTTATGAAACTACAGATGTGGGTAGTATCACAAGAGGAGCATCAAAATCAATTTCGAGTAGTTGCGGTACCATATGA
AA sequence Show only first row Show all	>Lus10036813 pacid=23171074 polypeptide=Lus10036813 locus=Lus10036813.g ID=Lus10036813.BGIv1.0 annot-version=v1.0 MSTTASKLFKKPVHHRTNSDEASKYFSAYNEDHPSSLTTTKTRVSSGSAGRMSLDLPTSSTGIEPFDHHHTVKIRNQILKEKGHIDTSTSTSNSTKQHKQ PSSPGGRLASFLNTLFHQASKKNKKKKSTANDEDHESPTGGGMIRRKRRSSISHFTRSITDTRSWYSSNHVPVLVPASSTSTSTIACTPTKSGYKNLRSL IAASDQNQKVGGVEKGSCCCKDSWLDEKCGNPDEIRIGDCGGGGGEDGCESDSSSDLFELQIFDFDAYSNGLPVYETTDVGSITRGASKSISSSCGTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69160			unknown protein		Lus10036813 [exp]	0	1
AT1G68430			unknown protein		Lus10003042 [exp]	3.6	0.8848
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10002381 [exp]	4.0	0.8771
AT3G30841			Cofactor-independent phosphogl...		Lus10034089 [exp]	4.6	0.8555
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002896 [exp]	6.6	0.8690
AT1G68430			unknown protein		Lus10034103 [exp]	8.1	0.8747
AT5G52882			P-loop containing nucleoside t...		Lus10039309 [exp]	10.0	0.8056
AT1G70280			NHL domain-containing protein ...		Lus10032158 [exp]	11.0	0.8581
AT5G52430			hydroxyproline-rich glycoprote...		Lus10028779 [exp]	12.2	0.8012
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10002213 [exp]	13.1	0.8514
AT3G11110			RING/U-box superfamily protein...		Lus10040942 [exp]	13.4	0.7503

Compare expression of checked genes

Lus10036813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.