Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69070 697 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019174 [exp] 1322 / 0 AT1G69070 845 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G140100 [exp] 824 / 0 AT1G69070 820 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04147 [flax] [poplar] Nop14 Nop14-like family
Representative CDS sequence Show only first row Show all	>Lus10036815 pacid=23171192 polypeptide=Lus10036815 locus=Lus10036815.g ID=Lus10036815.BGIv1.0 annot-version=v1.0 ATGGCGGCGAAGACTCAGAACAAAGCTCACAAGAACGGCAGTGAGAACAAGAACAAGAAGAAGAAGAAGAGTAAACGCACTGGTACAGCTGTAGTAGCAA TGAAGAAGCAGGCTACCGTGGCTGATAACCCCTTTGAGACGATTTGGTCCCGCCGCAAGTTCGACGTCATCGGCAAGAAGCGCAAGGGCGAAGAGCGGAG AGTCGGGTCCGCCCGCTCCAAGGCCATCGAGAAGCGGAAGAAGACGCTGCTCGTTGATTACCAGCGGAGCTCCAAGTCGTCTATGTTCGTCGATAACCGG ATCGGGGAAGGGAATGATGAGCTCACCGAGTTTGATAGGAATGTTTTGCGGTCGCAGAGGGAGCATAAGATGAAATTGGGGAAGAAGAGTAAGTTCAACT TGTCTGATGGAGATGAAGAAGAGGATGAGTTCGGGAGCTCGGCACTTGGTTCGTTTGGGGGAAGAGATGATTTCGAGGATGAAATGCCGTTTGATGATGA AGACGGTGGAGAACAAGATGGATGGAGAAAAAAGTCTGGCAACTTAAGGAACCTTGATTCTCCAGGCATGGCAGGGGATGGTGATGGTGAATTACAAGAA AATATCCATAAATCCAAGAAGGAAGTAATGCAGGAGATCATAATGAAGAGCAAACATTTTAAGGCGGAGAAGGCGAAAGAAAAGGAGGAAAATGAGAAGC TTATGGAAGAATTGGATCAAAAGTTCACATCTTTAGAGCAGTCAAAGGCCATATCTTCATTGATTGAGCCTGCCGAGGTGGATGTGGTGAAACCTGCTGT GACATTGAACCTTTACAAGACAGAAGTTACAAATGATAAGTTACCAACTACTAAGAGACTGGAAGCACGTAGTCAGGAACAACCTGATTCGTATGAAAAA CTTTTCTCAGAGATGGTGTTTGATATCCGAGCGCGCCCATCAGACAGGACTAAGACACCAGAAGAGATTGCAGAGGACGAGAGAGAACGACTCGAGCGAT TAGAGGAGGAGCGGCAAAAACGTATGGTTAATGCTAAAGATTCTAGTGATGAAGACGAAAGTGATACTGAGAGGCCCTTAAACAAGAGGCACCACTCAGT ATCTGGGGATGATCTTGGCGATTCCTTTTCTGTTCCAGAACCTGGAACTAGAATGGGTTGGGTTGGTGAGATTCTTGAACGTGAGGAAGCTGAAGAATCT GAGGATGAGGAGAGTGATGCTTCAGAGGGTTCAGAGAGTGGTGAAGATGAGGATGAAGGATCAGAGGAAGAAAGTGAGGAGGAAGATATAGCACATGTCA AGGTCCAGTCTCTAAAGGACTGGGAACAAAGTGATGATGAGAATGTTGATACAGATTTGGAAGATGATGATGATGATGAGAAGGATGTGACTCAAACGAG AGACCCGAAGAGGTCCAAAAAAAATGTCACAGCTGACATTGGGAAAGTGGATAAAGAATCTCAAGATGCTAAGAAAAAAAAAGCGGCCAGTGATCGGCAG TCAATGCAAGCAGACCTTCCATTCTTAATTGAAGCCCCGAAGACCATGGAAGAACTGTCCTCCTTAGTAGATACTCGCTCTAATGCTGACATTATTGTCA TAATTAATCGAATTCGGGCAAGCAATGCGATAAAGCTCGCTGCAGAAAACAGAAAAAAGATGCAGGTGTTTTATGGATTGCTCTTGCAGTACTTTGCAGT CTTAGCTAATAAAAAGCCCTTAAATTTCGAGTTGCTGAATTTGCTGGTTAAGCCCCTTATGGAGTTGAGCGTTGAGATTCCATATTTCTCAGCTATCTGT GCTCGGCAACGTATTTTGAAGACTCGATCACAGTTTTGCGAGTCAATGAAGAGTCAGGAATCGAGCTGTTGGCCCTCTTTCAAAACACTGTCTCTTTTGA GGTTGTGGTCTATGATTTTCCCATGCTCGGACTTCCGCCATGTCGTGATGACCCCAGCCATGCTGCTGATTTGTGAATATCTCATGCGTGCCCCCATCTC TTCTGGTCGTGATATTGCTGTTGGCTCTTTCTTATGTTCCATGGTTCTCTCTGTCACTAGAGAGACAAAGAAGTTCTGCCCAGAAGCCTTAATTTTTCTA CGGACCTTGCTGATGGCAGCCGGTCAAAGATTACCAGCTGCTCACGAAGGATCTCAGTTTCATCCCATCAGAGAGTTGAAGGAACTCCAGCCTCTGCTAT CTATACGCGGTGAAGTGCACAAGATTAGTCCTTTGAATTTCCTGGCAGTGATGGATAAAACCGAAGATGACTCATTTTTCAGTTCAGATACTTTCCGGGC AAGTGTGCTGGTGACTTTAACAGAAAACCTAAGGGGATTTATCGAATTGTATGGAAATCTCAGTTCCTTTCCAGAAATCTTCATCCCTATTTCGACACTA TTACTCGGATTGTCAGAGGAAGCAAATATTCCACCGGCATTGCAAGACAAAATCCGAGACGTTGCTCTCCTCATCAAGCAGAAAGCCGATGAGCATAATC TGCTTCGACAGCCGTTACAGATGCGGAAGCAGAAGCCAGTTCCAATGAAACAATACACTCCGAAATTTGAAGAGACATTCGTCAAGGGTAGAGATTACGA CCCAGATAGAGATCGTGCTGAGAGGAAGAAGATGGAGAAACGCCGGAAAGAAGAATATAAAGGTGCTGTTCGCGAACTTCGCAAGGATAACTACTTCATG CTCGGGGTGAAAGAACAGGAAAGGGCCGCGAGGGAGGAAGAGAAGAAGGAGGCTCACGGTCGAGCTAGAGCTTTCCTTCAAGAACAGGAGCACGATTATA AATCCGGCCAATTAGGGAAAGGGAAAGGCAAGAAGCGTAGGAGATGA
AA sequence Show only first row Show all	>Lus10036815 pacid=23171192 polypeptide=Lus10036815 locus=Lus10036815.g ID=Lus10036815.BGIv1.0 annot-version=v1.0 MAAKTQNKAHKNGSENKNKKKKKSKRTGTAVVAMKKQATVADNPFETIWSRRKFDVIGKKRKGEERRVGSARSKAIEKRKKTLLVDYQRSSKSSMFVDNR IGEGNDELTEFDRNVLRSQREHKMKLGKKSKFNLSDGDEEEDEFGSSALGSFGGRDDFEDEMPFDDEDGGEQDGWRKKSGNLRNLDSPGMAGDGDGELQE NIHKSKKEVMQEIIMKSKHFKAEKAKEKEENEKLMEELDQKFTSLEQSKAISSLIEPAEVDVVKPAVTLNLYKTEVTNDKLPTTKRLEARSQEQPDSYEK LFSEMVFDIRARPSDRTKTPEEIAEDERERLERLEEERQKRMVNAKDSSDEDESDTERPLNKRHHSVSGDDLGDSFSVPEPGTRMGWVGEILEREEAEES EDEESDASEGSESGEDEDEGSEEESEEEDIAHVKVQSLKDWEQSDDENVDTDLEDDDDDEKDVTQTRDPKRSKKNVTADIGKVDKESQDAKKKKAASDRQ SMQADLPFLIEAPKTMEELSSLVDTRSNADIIVIINRIRASNAIKLAAENRKKMQVFYGLLLQYFAVLANKKPLNFELLNLLVKPLMELSVEIPYFSAIC ARQRILKTRSQFCESMKSQESSCWPSFKTLSLLRLWSMIFPCSDFRHVVMTPAMLLICEYLMRAPISSGRDIAVGSFLCSMVLSVTRETKKFCPEALIFL RTLLMAAGQRLPAAHEGSQFHPIRELKELQPLLSIRGEVHKISPLNFLAVMDKTEDDSFFSSDTFRASVLVTLTENLRGFIELYGNLSSFPEIFIPISTL LLGLSEEANIPPALQDKIRDVALLIKQKADEHNLLRQPLQMRKQKPVPMKQYTPKFEETFVKGRDYDPDRDRAERKKMEKRRKEEYKGAVRELRKDNYFM LGVKEQERAAREEEKKEAHGRARAFLQEQEHDYKSGQLGKGKGKKRRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69070			unknown protein		Lus10036815 [exp]	0	1
AT3G09720			P-loop containing nucleoside t...		Lus10013644 [exp]	3.2	0.9525
AT3G03340		UNE6	unfertilized embryo sac 6, LUC...		Lus10020225 [exp]	4.1	0.9191
AT1G77030			hydrolases, acting on acid anh...		Lus10018941 [exp]	4.6	0.9414
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	6.5	0.9442
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10001301 [exp]	8.8	0.9360
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10007574 [exp]	8.9	0.9239
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	9.2	0.9401
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10020761 [exp]	9.5	0.9244
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10032773 [exp]	10.7	0.9378
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10011283 [exp]	10.8	0.9264

Compare expression of checked genes

Lus10036815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.