Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14620 329 / 4e-107 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT2G46950 324 / 2e-104 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT2G46960 321 / 9e-104 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14690 312 / 2e-100 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT2G26710 311 / 4e-100 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT4G27710 309 / 2e-99 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT3G14630 308 / 6e-99 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14680 308 / 6e-99 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14640 305 / 2e-97 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14610 303 / 8e-97 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019176 [exp] 871 / 0 AT3G14620 342 / 8e-112 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10019175 [exp] 703 / 0 AT3G14620 318 / 1e-103 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10036817 [exp] 593 / 0 AT2G26710 382 / 3e-121 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036818 [exp] 580 / 0 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019177 [exp] 579 / 0 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10005788 [exp] 525 / 1e-176 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10019184 [exp] 502 / 2e-174 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10026085 [exp] 494 / 2e-171 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10017775 [exp] 497 / 3e-171 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139600 [exp] 510 / 9e-178 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 467 / 5e-161 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 460 / 3e-158 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 460 / 6e-158 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 456 / 6e-157 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139300 [exp] 433 / 1e-147 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139500 [exp] 379 / 3e-127 AT3G14620 283 / 4e-90 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.006G154500 [exp] 330 / 3e-107 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 327 / 6e-106 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.005G035200 [exp] 310 / 6e-100 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10036816 pacid=23171246 polypeptide=Lus10036816 locus=Lus10036816.g ID=Lus10036816.BGIv1.0 annot-version=v1.0 ATGAGTAATTTGTCACTCATAATCATCTATGCCGCTGTCTTGTACGTTGTTTATGTCGTCGCGAATTTCCTTCGCAATGTGGTATGGAGACCCTTCAAAA CGCAGTGTATCCTCAACTCTCAAGGAATCAAAGGCCCCGGCTATCGTTTCCTCTTGGGAAATGCCAAGCAACTTGTACAGTTGAGGAATGAGGCGCTTTC GAAGCCGATGACCACCCTGTCTCACGATATATCTCGCAGGTGCATGCCTAATATCACCAGCTGGACCGAGCAGTATGGGAAGCCGTTTGCATTTTGGATC GGGCCGCGAGCGCAGCTGGTAGTGACGGAGCCAGAAGTTATCAAAGAGGTTATGAACACCAAGTACAAAATCTTTCCGAAAGCCGAGCAGTACTCTGTTT ATCTTAAGAAGATATTCGGGGAAGGGATAGTAACGAGTGAAGATGCAAAATGGAGCAAGGCTAAGAAGCTGGCCAACTTTGCTTTCCATGGAACCAGTCT CAAAGATATGATACCAGACATGGTTGGCAGTGTGGAGATGATGCTTGAGAGATGGAAGAGCATCAAACAAGGGGAAGAGATAGAAATTCATGAAGAATTC AGGATGTTGACCTCTGAAATTATCTCAAAAACTGCTTTCGGAAGTAGCTTTGAAGAAGGGATTGAGCTATTTTGGATGATTCATAAGATGATGGAACTTG CTGAGATTAATATGTACACTATCAGGTTACCATTCATCAGCAAAATGTTCAAAACCAAAGACGAGAAGGAATTGGAGTTGCTAGAGAAAGGAACTGAAGA CTGCATAAAGAAAATTATTTTGAAGAGAGAAGAGAATGTGAAAAATGGGGATGTTTATGGGTATGGCAATGATTTCATCGGTTTAATGATAAAGGCTTGC CACGAAGATGATGAAGCCAAGAAGATATCTACTCGGCAATTGATAGACGACTGTAGAATATTGTACACTGCTGGACAGGAGACAGGCAACTCCATGCTTT CTTGGATCATGCTGCTTCTGTCGGTCCATCGGGACTGGCAAGAAGCAGTAAGAGAAGAGGTTTTTAACGTCTTTGGCCGTGATCAAGTTCCTTATGCTGA TGGGATCGCGAGGTTGAAGAATATGGGCATGGTCGTTCTCGAAGCCCTAAGACTGTACTCACCTGTATACACAACGTTCATCCGCAACGTTATCGACAAG GAGGACAACGTAACGGTGGGTAAGTTGACCCAACTTGGCGAAGTCCAATTGCACATTCCGATCCTAGTGATTCACCACGACCCTAAGATATGGGGAAAGG ACGTGCATCTTTTCAACCCGAAGAGGTTTGAGGAGGGGATTGCTAAGGCTACAAACAACAATCCGACCGCATTTCTGCCCTTCGGGTTGGGACCACACAA GTGCGTTGGATCCAACTTTATTCAAGCCGAAGCTAAAGTAACGCTCGCGATGATTCTTCAACGATATTCGTTCACACTGTCGCCTGGCTATGTTCATGCT CCTTACCCTGGTGTGACGCTTCGCCCTCAGAATGGAGTTCAGATCATTCTCAATCCACTCTAG
AA sequence Show only first row Show all	>Lus10036816 pacid=23171246 polypeptide=Lus10036816 locus=Lus10036816.g ID=Lus10036816.BGIv1.0 annot-version=v1.0 MSNLSLIIIYAAVLYVVYVVANFLRNVVWRPFKTQCILNSQGIKGPGYRFLLGNAKQLVQLRNEALSKPMTTLSHDISRRCMPNITSWTEQYGKPFAFWI GPRAQLVVTEPEVIKEVMNTKYKIFPKAEQYSVYLKKIFGEGIVTSEDAKWSKAKKLANFAFHGTSLKDMIPDMVGSVEMMLERWKSIKQGEEIEIHEEF RMLTSEIISKTAFGSSFEEGIELFWMIHKMMELAEINMYTIRLPFISKMFKTKDEKELELLEKGTEDCIKKIILKREENVKNGDVYGYGNDFIGLMIKAC HEDDEAKKISTRQLIDDCRILYTAGQETGNSMLSWIMLLLSVHRDWQEAVREEVFNVFGRDQVPYADGIARLKNMGMVVLEALRLYSPVYTTFIRNVIDK EDNVTVGKLTQLGEVQLHIPILVIHHDPKIWGKDVHLFNPKRFEEGIAKATNNNPTAFLPFGLGPHKCVGSNFIQAEAKVTLAMILQRYSFTLSPGYVHA PYPGVTLRPQNGVQIILNPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10036816 [exp]	0	1

Compare expression of checked genes

Lus10036816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.