Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26710 382 / 3e-121 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14610 354 / 5e-111 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14620 351 / 1e-109 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14630 349 / 5e-109 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14690 347 / 3e-108 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT2G46960 346 / 8e-108 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14640 345 / 1e-107 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14660 345 / 1e-107 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14650 344 / 5e-107 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT2G46950 346 / 6e-107 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019177 [exp] 917 / 0 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036942 [exp] 886 / 0 AT2G26710 375 / 2e-119 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036818 [exp] 865 / 0 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10006245 [exp] 763 / 0 AT2G26710 345 / 4e-108 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019176 [exp] 621 / 0 AT3G14620 342 / 8e-112 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10036816 [exp] 620 / 0 AT3G14620 339 / 8e-111 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10019184 [exp] 564 / 0 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10019175 [exp] 560 / 0 AT3G14620 318 / 1e-103 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10026085 [exp] 537 / 0 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139600 [exp] 561 / 0 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 550 / 0 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 528 / 1e-177 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 525 / 3e-176 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 524 / 5e-176 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139300 [exp] 508 / 1e-169 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139500 [exp] 409 / 1e-132 AT3G14620 283 / 4e-90 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.018G070900 [exp] 396 / 1e-126 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 386 / 7e-123 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.005G035200 [exp] 370 / 7e-117 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10036817 pacid=23171053 polypeptide=Lus10036817 locus=Lus10036817.g ID=Lus10036817.BGIv1.0 annot-version=v1.0 ATGAACGAGTTTCTTTCTCATGATCTGCATCAAAGTCTTCGTCTCTTCTCTGAACCAGAAACTAGTTTCAGGATGAGTACTCTGTTTCTAGTTATAATCT CTGCATCCCTCTGTTTTCTGTGTGCTCTTCTGTTCAAGCTCCTCGACAACCTGCTATGGAAGCCTCTGAAGACGCAAAGATTCCTCAACTCTCAAGGAAT CTACGGTCCTCCTTACAGATTCCTCCTCGGCAATGTTAGAGAACTCATCTCCTTCAGAAACGAAGCCCTCTCCAAGCCAATGCCAAATCTTTCCCATGAA ATTTGTCCTAGGATCCTGCCTCACATGTCATTATGGGCCAAGAAATACGGGAAGATTTTCATGTTCTGGATCGGACCGCAAGCGCAGTTGGTACTAACGG AGCCAGAGATTATCAGAGAGGCTTTGTGTAGCAAAGATGGCGTGTTCCCGAAAACTGGACCGTATACTTCGTTCCACGAAAAGATCTTAGGCGGCGGGCT TACAATGACTGGAGGTGACAAATGGGTCAAGGTTCGGAAGCTTACCAATGTGGCTTTCCACGGAGAGAAACTTAAGGGTTTGGTTCCGGATATGATTGCT AGCGTGGAGATCATGCTAGAAAAATGGAAGAAACTTGACGGGAAGGAGATCGAGGTTCATGAAGAATTCATGATACTATCATCAGACATGGTTTCGAGGA CTTCTTTCGGTAGTAGCTTCGAGGAAGGGCAACAAATATTCAAAATGTTTAACGGGTTGATGGTGCTAGCCGAACGAAATACGTTCCAAATAAGTATCCC GATCATTAGCAAAGATGGGATCGAAGGCGAAAGGCTAGACCAGGGGATAAGGGACTCCATAATGAAGATAGTGAAAAAGAGGCAGGATAAGGTGAAGAGT GGAGAAATGGAAGGGTGTGGGAACGATTATCTCGGGATGTTGATAAGGGCTTATAACGACGAAGATGAATTGAGGAGGATCGATGTCGATCATTTGATCA ATGAATGCAAAACATTGTATGTTGCTGGGCAGGAAACGACCAATTCTTTGCTTTCTTGGATCGTTCTGCTTCTATCGATCCATCAGGATTGGCAAGACGA GGCAAGAAAAGAGGTCGTTGGTGTATTTGGCCACGACCGGAATCCTGATGCTGATGGGATTTCCAGACTCAAAGTGGCGAGTATGATCATCAACGAAACG CTAAGGCTCTATTCGCCAGTGTACTCGTCCTTCATGCGCAACATCGACGAGGATGTGACATTGGGGAAGCTGAAGGTGCCTGCAGGAGTACAGTTTCACG TACCGTTCATGTCCGTCCACCATGACCCTGAAATATGGGGAGAAGATGTGTATCTTTTCAAACCGGACAGATTTGCGGAAGGAGTTGTCAAGGCTACGAA CAACAACCCGGCTGCATTCATACCCTTCGGGATGGGGCCTCACATTTGTGCAGGATACAATTTCGCTTTGAACGAGGCCAAAGTAACACTTGCCATGATA CTGCAACGCTTTTCGTTCTCCCTCTCGCCCGGTTACGTACATTCACCTTTCGCTTTGTTTGCGCTCCGCCCCGAAAAGGGACTTCAACTCTTCCAGAACC TGCTATGGAAGCCTCTGAAGAAGCAAAGATTCCTCAACTCTCAAGGAATCTACGGCCCTCCTTACAGATTCCTCCTCGGAAATGTCAGGGAACTCATCTC CTTCAGAAACCAAGCCCTCTCCAAACCCATGCCGACTCTTTCCCATGACATTTCTCCAAGGATCCTGCCTCACATATCCTTCTGGGCCAAGGAATACGGG AAGACTTTCATGTTCTGGATCGGACCGCAACCGCAGTTGGTACTGACTGACCCGGAGATTATCAGAGAGGCTTTGTGTAGCAAAGATGGCGTGTTCCCGA AAACCGAACTGCATAGTTCGTTCCACGAGAAGATCTTAGGCGGCGGGCTTACAGTGACAGGAGGCGACAGATGGGTTAAGGTTCGAAAGCTTGCTAATGT TGCTTTCCATGGAGAGAAACTCAAGGGTTTGGTTCCGGATATGATTGCTAGTGTGGAGATCATGCTGGAAAAATGGAAGAAACTTGACGGGAAGGAGATC GAGGTTCATGAAGAATTCATGATACTATCATCAGACATGGTTTCGAGGACTGCTTTCGGCAGTAGCTTCGAAGAAGGGCAACAAATATTCAAAATGTTTA ATGGGTTGATGGTGCTAGCCGAGCGTAACACGTTCAAAATCAGGCTCCCAATCGTCAGTAAGATTTTTAAGAGCAAAGACGAGATCGAAGGCGAAAGGCT AGACCGGGAAGTAAGGGGTTCCATAATGAAGATAGTGAAAAAGAGGCAGGATAAGGTGAAGAGTGGAGAAATGGAAGGGTATGGGGACGATTATCTTGGG ATGTTGATAAGGGCTTACAATGACCCAGACGGATCGAGGAGGATCGATGTCGATCATTTGATCAATGAATGCAAAACATTGTACGTTGCCGGGCAGGAAA CGACCAATTCTTTGCTTTCTTGGATCGTTTTGCTTCTAGCGATCCATCAGGATTGGCAAGATGAGGCAAGAAAGGAGGTCGTCAGCCTATTTGGCCGCGA CCAGAATCCTGATGCCGATGGGATTTCAAGACTCAAAGTGGTGGGTATGATCATCAACGAAACGCTAAGGCTCTATTCTCCGGTGTACGCGTCCTTCATG CGCAACATCGACGAGGATGTGACACTGGGAAAGCTCAAGGTGCCCGCGGGGGTACAGTTTCACGTACCGTTCATGTCGGTTCACCATGACCCGGAGATAT GGGGAGAAGACGTGTATCTTTTCAAACCGGATAGATTTGCGGAAGGAGTTGTCAAGGCTACAAACAACAACCCTGCTGCGTTCATGCCCTTCGGAATGGG GCCTCACATTTGTGCAGGGTACAACTTCGCCTTGAGCGAGGCCAAAATTACGGTTGCCATGATACTGCAACGCTTTTCATTCTCCCTCTCGCCCGGTTAC GTACATTCGCCCTTTGCTTTGTTTGCGCTCCGCCCTGAAAAGGGACTCCAGGAAGCCAAGGTAACGCTTGCAATGATTCTTCAACGTTATTCGTTCACAC TGTCCCCTGGCTATGTTCATGCTCCTTACCCTGGTGTGACGCTTCGCCCCCAGAACGGAGTTCAGATATTTCTTAATCCACTCTTCTAG
AA sequence Show only first row Show all	>Lus10036817 pacid=23171053 polypeptide=Lus10036817 locus=Lus10036817.g ID=Lus10036817.BGIv1.0 annot-version=v1.0 MNEFLSHDLHQSLRLFSEPETSFRMSTLFLVIISASLCFLCALLFKLLDNLLWKPLKTQRFLNSQGIYGPPYRFLLGNVRELISFRNEALSKPMPNLSHE ICPRILPHMSLWAKKYGKIFMFWIGPQAQLVLTEPEIIREALCSKDGVFPKTGPYTSFHEKILGGGLTMTGGDKWVKVRKLTNVAFHGEKLKGLVPDMIA SVEIMLEKWKKLDGKEIEVHEEFMILSSDMVSRTSFGSSFEEGQQIFKMFNGLMVLAERNTFQISIPIISKDGIEGERLDQGIRDSIMKIVKKRQDKVKS GEMEGCGNDYLGMLIRAYNDEDELRRIDVDHLINECKTLYVAGQETTNSLLSWIVLLLSIHQDWQDEARKEVVGVFGHDRNPDADGISRLKVASMIINET LRLYSPVYSSFMRNIDEDVTLGKLKVPAGVQFHVPFMSVHHDPEIWGEDVYLFKPDRFAEGVVKATNNNPAAFIPFGMGPHICAGYNFALNEAKVTLAMI LQRFSFSLSPGYVHSPFALFALRPEKGLQLFQNLLWKPLKKQRFLNSQGIYGPPYRFLLGNVRELISFRNQALSKPMPTLSHDISPRILPHISFWAKEYG KTFMFWIGPQPQLVLTDPEIIREALCSKDGVFPKTELHSSFHEKILGGGLTVTGGDRWVKVRKLANVAFHGEKLKGLVPDMIASVEIMLEKWKKLDGKEI EVHEEFMILSSDMVSRTAFGSSFEEGQQIFKMFNGLMVLAERNTFKIRLPIVSKIFKSKDEIEGERLDREVRGSIMKIVKKRQDKVKSGEMEGYGDDYLG MLIRAYNDPDGSRRIDVDHLINECKTLYVAGQETTNSLLSWIVLLLAIHQDWQDEARKEVVSLFGRDQNPDADGISRLKVVGMIINETLRLYSPVYASFM RNIDEDVTLGKLKVPAGVQFHVPFMSVHHDPEIWGEDVYLFKPDRFAEGVVKATNNNPAAFMPFGMGPHICAGYNFALSEAKITVAMILQRFSFSLSPGY VHSPFALFALRPEKGLQEAKVTLAMILQRYSFTLSPGYVHAPYPGVTLRPQNGVQIFLNPLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036817 [exp]	0	1
AT1G24440			RING/U-box superfamily protein...		Lus10036937 [exp]	1.4	0.9598
AT4G27870			Vacuolar iron transporter (VIT...		Lus10037315 [exp]	4.8	0.9397
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034475 [exp]	5.5	0.9597
AT4G14305			Peroxisomal membrane 22 kDa (M...		Lus10011798 [exp]	5.8	0.9358
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	6.6	0.9601
AT2G36780			UDP-Glycosyltransferase superf...		Lus10003322 [exp]	6.9	0.9585
AT3G03720		CAT4	cationic amino acid transporte...		Lus10005687 [exp]	7.7	0.9549
AT4G20930			6-phosphogluconate dehydrogena...		Lus10023258 [exp]	9.0	0.9489
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10006686 [exp]	9.6	0.9376
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10037085 [exp]	9.8	0.9533

Compare expression of checked genes

Lus10036817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.