Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26710 350 / 5e-115 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14630 335 / 2e-109 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14610 329 / 3e-107 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14620 328 / 8e-107 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14640 327 / 3e-106 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14690 325 / 1e-105 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14650 323 / 1e-104 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT3G14660 322 / 2e-104 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14680 321 / 4e-104 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT2G46960 317 / 2e-102 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019177 [exp] 853 / 0 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036817 [exp] 850 / 0 AT2G26710 382 / 3e-121 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036816 [exp] 602 / 0 AT3G14620 339 / 8e-111 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10019176 [exp] 600 / 0 AT3G14620 342 / 8e-112 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10019184 [exp] 563 / 0 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10019175 [exp] 547 / 0 AT3G14620 318 / 1e-103 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10026085 [exp] 529 / 0 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10005788 [exp] 532 / 1e-179 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10026084 [exp] 508 / 5e-177 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139600 [exp] 559 / 0 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 534 / 0 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 513 / 3e-179 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 510 / 1e-177 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139300 [exp] 508 / 3e-177 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 493 / 2e-171 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 363 / 4e-120 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139500 [exp] 356 / 2e-118 AT3G14620 283 / 4e-90 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.006G154500 [exp] 357 / 7e-118 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.005G035200 [exp] 343 / 7e-113 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10036818 pacid=23171315 polypeptide=Lus10036818 locus=Lus10036818.g ID=Lus10036818.BGIv1.0 annot-version=v1.0 ATGAGTACTCTGTTTCTAATTGTAATCCCCGCATCTCTCTCTCTTCTCTGTGCTCTTCTGTTCAAGCTCTTCGACAACTTGCTATGGAAGCCTCTGAAGA CGCAAAGATTCCTCAACTCCCAAGGAATCTACGGCCCTCCTTACAGATTCGTACTAGGAAATGTCAGGGACCTCATCTCCTTCAGAAACCAAGCCCTCTC CAAACCCATGACGAATCTTTCCCATGATATTTGTCCTAGGATCCTGCCTCACATGTCCTTCTGGGCCAAGAAATACGGGAAGATTTTCATGTTCTGGATC GGACCACGAGCGCAGTTGGTACTGATGGAGCCAGAGATTATAAGGGAGGCTTTGTGTAGCAAAGATGGCGTGTTCCCGAAAACCGAAGCGTTTACTTCGT TCCACGAGAAGATCTTAGGCGACGGGGTTACAATGACCGGAGGTGACAAATGGGTCAAGGTTCGGAAGCTTGCCAATGTTGCTTTCCACGGAGAGAAACT CAAGGGTCTAGTTCCGGATATGATTGCCAGTGTAGAGGTCATGCTGGAGAAATGGAAGAAATTTGACGGGAAAGAAATCGAGGTTCACGAAGAATTCAGG ATACTGTCATCAGAAGTGATTTCCAAGACTGGTTTCGGTAGTAACTTCGAGGAAGGGCAACAAATATTCGAAATGCTTAACGGGTTGATGGTGCTAGCCG AACGGAACACATACAAAATCAGTCTTCCAATCATCAGTAAAATTTTCAAGAGCAAAGACGAGATGGAAAGCGAGAGGCTGGACCAGGGGATAAGGGACTC CATAATGAAGATAGTGAAAAAGAGGCAGGATAAGGTGAAGAGTGGAGAAATGGAAGGGTATGGAAATGATTATTTTGGGATGTTGATAAAGGCTTACAAC GACGAAGATGAATCGAGGAGGATCGATGCCGCGCAACTGATCGATGAGTGCAAAACATTGTACGTTGCCGGGCAGGAAACGACAAATACTTTGCTTTCTT GGATCATTCTGCTTCTATCGATCCATCAGGATTGGCAAGAAGAGGCAAGAAAGGAGGTCATCAGCCTATTTGGCCGTGACCGGAATCCTGATGCTGACGG GATTTCCAGACTCAAAATCGCGGGTATGATCATCAACGAAACACTAAGGCTCTATTCGCCAGTGTCCTCGTCCTTAATGCGCAACGTCGACGAGGATGTG ACACTGGGGAAGCTCAAGGTGCCTGCAGGGGTACAGTTTCATGTACCATTCATGTCTGTCCACCATGACCCTGACATATGGGGAGAAGACGTGTACCTTT TCAAGCCGGATAGATTCGCTGAAGGAGTTGTCAAGGCTACGAACAACAACCCGGCAGCGTTCATACCGTTTGGGATGGGGCCACATATATGTGCAGGATT CAACTTCGCCGCGAACGAGGCCAAAATATCGCTTGCGATGATACTGCAACGCTTTTCATTCTCCCTCTCGCCCGGTTACGTACATTCACCTTTTGCTTTG TTTGCGCTCCGCCCCGGAAAGGGACTTCAGGTGATACTTCATGCCCTGTAA
AA sequence Show only first row Show all	>Lus10036818 pacid=23171315 polypeptide=Lus10036818 locus=Lus10036818.g ID=Lus10036818.BGIv1.0 annot-version=v1.0 MSTLFLIVIPASLSLLCALLFKLFDNLLWKPLKTQRFLNSQGIYGPPYRFVLGNVRDLISFRNQALSKPMTNLSHDICPRILPHMSFWAKKYGKIFMFWI GPRAQLVLMEPEIIREALCSKDGVFPKTEAFTSFHEKILGDGVTMTGGDKWVKVRKLANVAFHGEKLKGLVPDMIASVEVMLEKWKKFDGKEIEVHEEFR ILSSEVISKTGFGSNFEEGQQIFEMLNGLMVLAERNTYKISLPIISKIFKSKDEMESERLDQGIRDSIMKIVKKRQDKVKSGEMEGYGNDYFGMLIKAYN DEDESRRIDAAQLIDECKTLYVAGQETTNTLLSWIILLLSIHQDWQEEARKEVISLFGRDRNPDADGISRLKIAGMIINETLRLYSPVSSSLMRNVDEDV TLGKLKVPAGVQFHVPFMSVHHDPDIWGEDVYLFKPDRFAEGVVKATNNNPAAFIPFGMGPHICAGFNFAANEAKISLAMILQRFSFSLSPGYVHSPFAL FALRPGKGLQVILHAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036818 [exp]	0	1
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10024090 [exp]	2.0	0.9673
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	3.5	0.9577
AT1G15260			unknown protein		Lus10037547 [exp]	3.9	0.9564
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10040975 [exp]	7.7	0.9504
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002019 [exp]	7.7	0.9442
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10010758 [exp]	8.5	0.9407
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Lus10039719 [exp]	12.0	0.9150
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022506 [exp]	14.8	0.9469
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10033932 [exp]	15.1	0.8879
					Lus10041394 [exp]	17.0	0.9270

Compare expression of checked genes

Lus10036818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.