Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 246 / 9e-77 HXXXD-type acyl-transferase family protein (.1) AT1G24420 233 / 5e-72 HXXXD-type acyl-transferase family protein (.1) AT3G30280 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) AT4G15390 215 / 4e-65 HXXXD-type acyl-transferase family protein (.1) AT1G24430 214 / 8e-65 HXXXD-type acyl-transferase family protein (.1) AT5G47980 208 / 3e-62 HXXXD-type acyl-transferase family protein (.1) AT5G47950 204 / 7e-61 HXXXD-type acyl-transferase family protein (.1) AT5G23970 187 / 2e-54 HXXXD-type acyl-transferase family protein (.1) AT4G15400 171 / 2e-48 HXXXD-type acyl-transferase family protein (.1) AT5G48930 97 / 1e-21 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019183 [exp] 799 / 0 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 238 / 1e-73 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 237 / 3e-73 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10036927 [exp] 199 / 7e-61 AT3G26040 138 / 9e-38 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 207 / 5e-60 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10039330 [exp] 199 / 8e-59 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 187 / 3e-54 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10036928 [exp] 168 / 1e-50 AT3G30280 103 / 7e-27 HXXXD-type acyl-transferase family protein (.1) Lus10035932 [exp] 172 / 2e-48 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G054100 [exp] 257 / 6e-81 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 253 / 1e-79 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 251 / 8e-79 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 251 / 8e-79 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 243 / 1e-75 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 233 / 7e-72 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 229 / 1e-70 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 224 / 9e-69 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.006G010300 [exp] 223 / 3e-68 AT3G26040 294 / 2e-95 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 210 / 4e-63 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10036819 pacid=23171254 polypeptide=Lus10036819 locus=Lus10036819.g ID=Lus10036819.BGIv1.0 annot-version=v1.0 ATGAAGCTTCCAGTAAGAAAACCAGAGGTTTACTCAAGGGAGATGATCAAACCATCTTCTCAAACTCCAACCCACAACGAAACCCACAACCTTTCCTTTT TCGACCAGTTGACTCCTCCTATCTACATCCCTCTACTCTTCTTTTACCATTGTTGTGATCAAGAACCGGTCCATCCCAAAAACTCGATCATGCTGAAAAA ATCCCTCTCTTCAGCACTAACCAAGTACTACCCACTAGCCGGAACAATAATCATGGATTCGCTAACAGTCGACTGCAACGACACAGGTGTCGCCTTCCTA CAGGCGCGGATGATAAACTCGAAACTGTCCGAATTTCTCGAGGCTCCGACGGATGAAGCCATGAAGCCACTGTTCCCTGATGATCTTTGTTATAAGGACA CAACCTTGAGCAGTCCGTTGACCGTCCAGGTCACGGAGTTTGACTGTGGAGGTTTGGCTTTAGCCATATGTTGGTCCCATAAGATCTTAGACATGTCGAG TATTTGTTCGTTTGTCAACTACTGGGCTGCCTTGGCTACTGGTCGGACCGAAATTCTGGATACGCCACTTGAACTTATTTCGAAAGCTCTGTACCCTCCG ATTAATTCGCAGGTATCAATGACTATTTATCCTCAACCAGTGAAATGCATCAACAAGAGACTGGTCTTCTCAGGGACAACCATTTCCAAACTCAAATCCA TGGTCGACAACAAGGTCACTAACCCAACAAGGGTAGAACTAGTTCTGGCACTTTTATATGGGTCTGCCGTTTCGGCAGCTAGAGCCTGCTCGGTTCGAGT TTTGAAGCCAACAATTTTAAGCCAAGCAGTAAACATGCGCGGCAGGTTAATCTCAGACACTCCATCCCCAACTTCGATTGGGAACTTTTCTTCAACCTTC GTCATGCCGACTTCTCTAGATTTCAACCCGGACCACCTACTCCCACTGGTCGAGGCAATCAGGAAGACGAAAACTGAGTATTTCGAGTCGTGCAAGGTCG AATTCGGAAGTGGGGAAGAGTTTTGCAAGTTTATAGTGGATACCACTAATGCGTTTAGAGGAACTGGGAGTGGTGAAGGAATGGATGTGTACATTTCCAC CAGCTGGTGTGGTTACCCATTGTACGATTCGGATTTTGGGTTTGGGAAACCGGTTTGGATGACAACTGCTGGTTCGGGTATGAAGGACGTGATCATCTTG ATGGATACGAGGAATGGGGATGGGATCGAGGCACTTGTTTGTTTGGAAGAAGAAGAGATGGCTGCATTTGAGAGAGATCAGAGGGTTGTTGATTTCGCCG AAATCAACCCGAACCCGTTTCTCTGA
AA sequence Show only first row Show all	>Lus10036819 pacid=23171254 polypeptide=Lus10036819 locus=Lus10036819.g ID=Lus10036819.BGIv1.0 annot-version=v1.0 MKLPVRKPEVYSREMIKPSSQTPTHNETHNLSFFDQLTPPIYIPLLFFYHCCDQEPVHPKNSIMLKKSLSSALTKYYPLAGTIIMDSLTVDCNDTGVAFL QARMINSKLSEFLEAPTDEAMKPLFPDDLCYKDTTLSSPLTVQVTEFDCGGLALAICWSHKILDMSSICSFVNYWAALATGRTEILDTPLELISKALYPP INSQVSMTIYPQPVKCINKRLVFSGTTISKLKSMVDNKVTNPTRVELVLALLYGSAVSAARACSVRVLKPTILSQAVNMRGRLISDTPSPTSIGNFSSTF VMPTSLDFNPDHLLPLVEAIRKTKTEYFESCKVEFGSGEEFCKFIVDTTNAFRGTGSGEGMDVYISTSWCGYPLYDSDFGFGKPVWMTTAGSGMKDVIIL MDTRNGDGIEALVCLEEEEMAAFERDQRVVDFAEINPNPFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036819 [exp]	0	1
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10030709 [exp]	1.0	0.9888
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10000208 [exp]	2.4	0.9863
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027772 [exp]	2.4	0.9865
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10015734 [exp]	3.9	0.9838
					Lus10002317 [exp]	4.0	0.9846
					Lus10002764 [exp]	5.7	0.9583
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10000592 [exp]	6.0	0.9638
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004239 [exp]	6.2	0.9636
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	6.9	0.9801
					Lus10038295 [exp]	7.0	0.9785

Compare expression of checked genes

Lus10036819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.