Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26710 375 / 4e-125 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT1G75130 340 / 1e-111 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT3G14610 337 / 3e-110 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14630 328 / 5e-107 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14640 328 / 1e-106 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14680 323 / 5e-105 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14660 322 / 3e-104 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14690 319 / 4e-103 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT5G38450 318 / 7e-103 CYP735A1 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) AT3G14620 318 / 1e-102 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036942 [exp] 753 / 0 AT2G26710 375 / 2e-119 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10006245 [exp] 665 / 0 AT2G26710 345 / 4e-108 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036822 [exp] 568 / 0 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10004633 [exp] 533 / 0 AT2G26710 378 / 4e-126 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036823 [exp] 483 / 5e-171 AT3G14610 227 / 2e-71 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) Lus10019184 [exp] 477 / 8e-165 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10026085 [exp] 471 / 2e-162 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10036818 [exp] 459 / 1e-157 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10017775 [exp] 459 / 5e-156 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139300 [exp] 587 / 0 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 581 / 0 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 574 / 0 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 567 / 0 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 565 / 0 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139600 [exp] 560 / 0 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139500 [exp] 482 / 1e-167 AT3G14620 283 / 4e-90 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.006G154500 [exp] 389 / 4e-130 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 383 / 6e-128 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.002G134500 [exp] 364 / 3e-120 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10036820 pacid=23171109 polypeptide=Lus10036820 locus=Lus10036820.g ID=Lus10036820.BGIv1.0 annot-version=v1.0 ATGGTTGAAGTTGGAACTTTGTTGACCTTCTTCTCATCCTGTCTATGTTTATACTTGGTGTTCACTATCAGCAGGTTCCTGAATATAGTATGGTGGACGC CAATTCGAATCCAATCCCAGATGAGGGCACAAGGAATCAAAGGCCCTTCTTACAGATTCTTCCATGGGAACACCAAAGAGATAACCCAGATGAGAATTGA AGCTTCAAAGATTCCCATGGAGTTATCCCACCATGTCCTTCCTAGACTCCAGCCCCACATCTACTCTTGGATCAAGCTCTATGGGAACAACTTCTTGCAG TGGTATGGCAGCAGGGCTCAGCTTGTGGTGACTGAACCTGAGCTGATCAAAGAGGTGCTCAACTGTAAAGATGGAACTTTTGAGAAGATAGGGTTTCAGG ACTTCATCAGAGATCTTTTAGGGGATGGACTTGTCTTGTCCAGAGGTGACAAATGGTTGAAGATGCGCAAGCTCGCTACCCATGCCTTCCATGGAGAAAG CTTGAAGGGTATGGTTCCAGCCATGATTTCAAGCGTCAAGATGATGCTGGAGAGGTGGGAAAAGAACAATCCTACTGGAGAGAAGAAAGAGATCGAGGCG TTTCACGAATTTAGAATCTTGACATCAGAGATCATATCCAGGACAGCTTTTGGAAGCAGCTACCTGGAAGGAGAGAAAGTTTTTGACTTGCTGATGAAGA TGGTTTTGATCATCTCACGAAACAACTACAAAGTCCGGATTCCAGGACTCGGATCCTTCTTTAGACGTGGGGATGAGCATGAATCAGCTGTTCTTCAACA AGAGATCAAATCCATCATCATGAACATGGTCAGCAAAAGAAAAGAAGGGAATACCAGTAGTAGTTCTGCAACTGATTTCCTTGGAATGCTTATCAAGGCT CATACCGACCCGGACATGAACGATAGCATAACAATGGATGATCTGATTGATGAATGCAAGACATTCTACGTCGCAGGCCACGAAACCACAACGAGCTCGC TGACCTGGACGGTACTTCTCTTAGCCATTCACTCTGAATGGCAAGAGAAAGCCAGGGAACAAGTGATTCAACTGTTTGGCAATAACACAACTCCAACTCC TGATGGAATTTCCAGATTGTCCATTCTGACAATGATCATTAATGAATCTCTGAGGCTATACCCTTCAGTGTTACACCTCTCGAGGAAAGTCGAACAAGAC CAAGTACGATTGGGTGGAAAGCTAAGTCTTCCGAAAGGGACTGAAGTCTACATCCCGAATCTTGCAGTGCAGCATGCACATGAAATATGGGGGGAAGATG CTCAGCTCTTTAGACCTGAAAGATTTGCAGAATCAGGGGTAGTTAAAGCTGCTACATTTCTACCGTTCGGGTTGGGGCCTCGAAACTGTGTAGGTATGAA CTTTGCTATCACGGAAGAGAAGATTGCACTGTCGATGATTTTGCAGCGTTACAAGTTTAGCCTATCGGACAAGTATGTGCACTCGCCGGCTCAGGTTTTG ACTAGCTGCCCACAGCATGGTCTGCAAATTGTTCTTGAGAAACTTTCAAGGAAGGAATGA
AA sequence Show only first row Show all	>Lus10036820 pacid=23171109 polypeptide=Lus10036820 locus=Lus10036820.g ID=Lus10036820.BGIv1.0 annot-version=v1.0 MVEVGTLLTFFSSCLCLYLVFTISRFLNIVWWTPIRIQSQMRAQGIKGPSYRFFHGNTKEITQMRIEASKIPMELSHHVLPRLQPHIYSWIKLYGNNFLQ WYGSRAQLVVTEPELIKEVLNCKDGTFEKIGFQDFIRDLLGDGLVLSRGDKWLKMRKLATHAFHGESLKGMVPAMISSVKMMLERWEKNNPTGEKKEIEA FHEFRILTSEIISRTAFGSSYLEGEKVFDLLMKMVLIISRNNYKVRIPGLGSFFRRGDEHESAVLQQEIKSIIMNMVSKRKEGNTSSSSATDFLGMLIKA HTDPDMNDSITMDDLIDECKTFYVAGHETTTSSLTWTVLLLAIHSEWQEKAREQVIQLFGNNTTPTPDGISRLSILTMIINESLRLYPSVLHLSRKVEQD QVRLGGKLSLPKGTEVYIPNLAVQHAHEIWGEDAQLFRPERFAESGVVKAATFLPFGLGPRNCVGMNFAITEEKIALSMILQRYKFSLSDKYVHSPAQVL TSCPQHGLQIVLEKLSRKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	1.4	0.9830
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	1.4	0.9836
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10036823 [exp]	2.0	0.9783
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024078 [exp]	2.4	0.9818
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Lus10003435 [exp]	3.0	0.9725
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036536 [exp]	3.2	0.9760
AT2G44420			protein N-terminal asparagine ...		Lus10033495 [exp]	3.9	0.9616
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	4.0	0.9733
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10040945 [exp]	4.5	0.9722
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	4.9	0.9752

Compare expression of checked genes

Lus10036820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.