Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26710 408 / 2e-136 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14620 372 / 1e-122 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14640 372 / 3e-122 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT2G46960 355 / 1e-115 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14660 353 / 3e-115 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14680 351 / 2e-114 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT2G46950 349 / 8e-113 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14690 346 / 2e-112 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14610 345 / 4e-112 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14630 344 / 1e-111 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004633 [exp] 767 / 0 AT2G26710 378 / 4e-126 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026681 [exp] 639 / 0 AT3G14620 322 / 4e-103 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10036820 [exp] 588 / 0 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036942 [exp] 574 / 0 AT2G26710 375 / 2e-119 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019184 [exp] 521 / 1e-180 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10026085 [exp] 514 / 6e-178 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10017775 [exp] 508 / 6e-174 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10026084 [exp] 495 / 2e-170 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036818 [exp] 478 / 9e-164 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139300 [exp] 656 / 0 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 627 / 0 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 615 / 0 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 604 / 0 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 587 / 0 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139600 [exp] 582 / 0 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 416 / 2e-139 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 414 / 2e-138 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G098800 [exp] 396 / 7e-132 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101401 [exp] 394 / 4e-131 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07993 [flax] [poplar] NAD_binding_4 Male sterility protein CL0063 [flax] [poplar] PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10036822 pacid=23171202 polypeptide=Lus10036822 locus=Lus10036822.g ID=Lus10036822.BGIv1.0 annot-version=v1.0 ATGACTCCGTGGCCAGCATCACTACTTGAGAATAAGACCATTTTCGTCGCTGGTGCATCCGGCTTCCTGGGGAAGTTGTTTGTGGAGGAGATACTGAGGG TCCAACCTAATGTGAAGAAGCTATACCTTCTTCTACGAGCTCCAGATTCACACTCTGCCACAAACAAATTTCATCATGAGATGGCCAACTTGACATATAA TATTATGATGCTCAACATCACTCTCAAAAGTCTTCTTTATTTAATTCCACTCAACGGAAGAGATAAACTAGGTTCTACTGATGCGAAAGTTAGAAGAAGA AGTAGATCTAAAGAAAACCTTGAGATGGGAGACCTAATTATGATGCAACTGTTTTTCCTTACCTTGCTTTCTGTTGTCCTTGTTAATATCCTCAGGTTCT TGAATCAAGTATGGCTGAGACCGATCCGGATTCAGTCCGAAATGACTTCTCAGGGGATTAAAGGCCCTCCTTACAGGTTTCTTCATGGAAACACCAAAGA GATCAATGATATGATAAGTCAAGCTGTTAGCAACCCCATGGAAATTTCTCATCAGATTCTCCCCAGAATCATGCCACATGTCCATTCCTGGACAAAGATT TACGGGATGAACTTTCTGAATTGGTATGGAACAAAGCCTCAGCTGGTAGTTACTGATCCTGAGCTTGTGAAAGAGGTGCTGAGCAATAAAGAAGGAAACT ATCCCAAGAAGTTCATCCAGAGCTATGCAGACAAGTTCCTCGGGAACGGCCTGTTAACCTCGGGAGGAGAGAAATGGATGAAGACGAGGAAGCTTGCGAA CCAAGCTTTCCATGGTGAATGCTTGAAGGCTATGATTCCAGCAATGGTCACCAGTGTGGAATCCATGTTGCAGAGATGGAAATCAGATGATGTGAAGGAG ATTGATGCCTTCCCGGAGTTCAAGATTTTGTCGTCGGAAGTGATTTCGAGGACAGCGTTCGGAAGTAGTTACTTGGAAGGCAAGAAAGTGTTTGAGATGT TAATGAAGCTTGGGATCATTGTCAACAGAAACAACTACAAAATTAGCATCCCTGGGATCAAAAAATTCTGGAGAACAAGTGACGATGTAGAATCAGACAA GCTCCAGAAAGACATTAAAGAAGCAATCATAAAGCTGATAAACAAAAGGGAAGGTTTGATGGATGATGGAAGTGGAAGTTATGGCAGTGACTTCCTTGGA TCACTTCTCAATGCTTTTCATGACAGTGACTTGTCCAGCAAGATAACTGTTGATGATGTGGTCGACGAGTGCAAGTCATTTTATGTAGCAGGACACGAGA CAGTCACTTGTTCGCTGACATGGACCGTTCTGCTTCTAGCGATTCACACAGATTGGCAGGACAAGGCACGGGAAGAGGTGCTGGAAATGTTCGGATCAAC AAAAAATCCTTGCCTCGATGGTGTTTCGAAGTTGAAAACCATGGCAATGATTGTTAATGAATCGTTGAGGCTCTACCCGCCCGCATTTAATTTGACCAGA GAAGTTGAGAGGGAAACCAAGTTAGGGACGTTCATCCTTCCTGAAAAGATGGCATTGAGTCTTCCAATCTTGGCAATTCACCATAACCCATTGCTATGGG GAGAAGACTGCCATATTTTCAAACCAGAGAGATTTGCTGATGGGGTGGCTAATAGAGCATTTCTTCCATCTGGTTTTGGACCGAGAACTTGCGTGGGGAT GAACTTTGCAGCTGCAGAAACTAAAATCACGCTCTCGATGCTACTCCAACGGTATCGATTGGCTCTTTCGCCTTCTTATGTCCATGCACCAGTTCACATG CTCACAATCTGCCCTAAACATGGCCTTCCAATCCTCCTCCAGCCACTCTAA
AA sequence Show only first row Show all	>Lus10036822 pacid=23171202 polypeptide=Lus10036822 locus=Lus10036822.g ID=Lus10036822.BGIv1.0 annot-version=v1.0 MTPWPASLLENKTIFVAGASGFLGKLFVEEILRVQPNVKKLYLLLRAPDSHSATNKFHHEMANLTYNIMMLNITLKSLLYLIPLNGRDKLGSTDAKVRRR SRSKENLEMGDLIMMQLFFLTLLSVVLVNILRFLNQVWLRPIRIQSEMTSQGIKGPPYRFLHGNTKEINDMISQAVSNPMEISHQILPRIMPHVHSWTKI YGMNFLNWYGTKPQLVVTDPELVKEVLSNKEGNYPKKFIQSYADKFLGNGLLTSGGEKWMKTRKLANQAFHGECLKAMIPAMVTSVESMLQRWKSDDVKE IDAFPEFKILSSEVISRTAFGSSYLEGKKVFEMLMKLGIIVNRNNYKISIPGIKKFWRTSDDVESDKLQKDIKEAIIKLINKREGLMDDGSGSYGSDFLG SLLNAFHDSDLSSKITVDDVVDECKSFYVAGHETVTCSLTWTVLLLAIHTDWQDKAREEVLEMFGSTKNPCLDGVSKLKTMAMIVNESLRLYPPAFNLTR EVERETKLGTFILPEKMALSLPILAIHHNPLLWGEDCHIFKPERFADGVANRAFLPSGFGPRTCVGMNFAAAETKITLSMLLQRYRLALSPSYVHAPVHM LTICPKHGLPILLQPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036822 [exp]	0	1
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10000022 [exp]	1.0	0.8670
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10027062 [exp]	10.8	0.7471
AT5G67265			unknown protein		Lus10042633 [exp]	17.8	0.7788
AT4G27595			Plant protein of unknown funct...		Lus10042237 [exp]	25.0	0.7000
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021184 [exp]	27.3	0.6620
					Lus10014099 [exp]	31.7	0.6369
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10024210 [exp]	32.1	0.6369
AT3G53010			Domain of unknown function (DU...		Lus10042636 [exp]	35.7	0.6354
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10026419 [exp]	37.5	0.6615
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	40.1	0.6318

Compare expression of checked genes

Lus10036822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.