Plant FIBer expression Database

Lus10036825 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G69060 199 / 5e-56 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019189
[exp]
836 / 0 AT1G69060 223 / 6e-65 Chaperone DnaJ-domain superfamily protein (.1)
Lus10019188
[exp]
129 / 3e-31 AT3G14630 158 / 5e-41 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G109100
[exp]
225 / 4e-65 AT1G69060 256 / 7e-76 Chaperone DnaJ-domain superfamily protein (.1)
Potri.T155180
[exp]
225 / 4e-65 AT1G69060 256 / 7e-76 Chaperone DnaJ-domain superfamily protein (.1)
Potri.010G139100
[exp]
222 / 1e-63 AT1G69060 278 / 1e-83 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0392 Chaperone-J PF00226 DnaJ DnaJ domain
Representative CDS sequence
>Lus10036825 pacid=23171230 polypeptide=Lus10036825 locus=Lus10036825.g ID=Lus10036825.BGIv1.0 annot-version=v1.0
ATGAGGGGAGAGGGACTGTCGAGAGATCGTTCGCAGACTGGACCTTCTTCGGGGAAGAGAACATTACGGCCCTGCAAGATGAAGGAAAATTTCGATAATG
TGGTGGTGATTGATGTTGACGACAGTGACGGATATGATGGGGTGTTTGTCATTGATGTCCCTAAGAGTTCCAAAAAGGGCGTTGGTTTGCGTGATTCTTC
TCTTAAGCAGAATTTTGGACCTTCTCATGTGCTTAGAGAAAGGAATCGAGTTTCGTTCGAGGGAACGATACACATTGATGATGACGAGGAGGAGGATAAG
GCTGACTCTTGTTACGAGTGTGATAGTGATTCATCCGAAGATGATGACCAGAATTTGGGGGTTAATGACATGCCGAGTACTTCTGCTCCGAGCAATGTAC
AGAAGGACTCTACAGTGGATGCTTCTGATGATTGTGAGTTTATTGGGTTCGGAGTATGGACTCGCAACTTGTCTAGATGCAGGGCACGCTACAACGAGGA
ATCTTGTTCCAGGAATCATTATGGTTACTATCCTGACTTAAGTGATTCCTCTGAAAGTGACTCTTCTGATTGTGAAATTTTGGACGGTTCTCATGGAAAC
CCCCGGGAGCAGTGGGAAGAAGCTTGTAAGAGGAAGAAAAAATCTTATGCTTCTAAGGATCAGTCTGATGCACATGATAAGGATGGTTCCTCTAATTGTG
ATAAGGATCAGTCGGGTGCAAAATATAGGAATGGTTCCTCTGATCCAGAAACCGAACGATTTTCGAATCCAGGTCCAGCTACAGAATCAACTCAGAAAGT
TGACCAGGAGAGTGTGCCTGGCTGTTCACATTCAACATCGGCAGCGAATGCTAGTCCTCTTAATAAAGGTGATGATCGCAGTTCTGGTCTCGACAAGTAT
CCAAGTTCTAACGAAGATAACTCTAGGTTTCAGGATCCTTCTTCGTGCAAGGAAGGATTATGGCAAGATTTGGTGAATAGCACATTTATACCTAAAAGTA
AAGAAACCAGCCGTCATGGTACCGCCACTTCTAAAGGTATAAAGGAACTAGATTTATCTGGGAAGCAACATCAGGCAACTCAACATAAGCCAGAGACATC
AGGTTCTGGAGAAAAAAAGAGGCCATCGGCTGAACTTATACCTGAATCACACCACTCTTCTGACGATAACCCGGTGAGCTCTTCTTCTCCTGAGGATGCT
TCACTTTGTGAAGGAAATATAATCAACGAGCGTGAGAAGATGAAGGAGACTGCGGAATACAAGCGTGCCGTTGAAGAGGAATGGGAAGCTAGGCAGCAGC
AACTACGAATTCAGGCAGAGGAGGCTCAGAGATTGCGGAAAAGGAAAAAGGCTGAAGCTTTGCGCATCTTGGACATGCAGAGGAGGCAGAAGCAGCGGCT
GGAAGAAGTTAGAGAGATACAGAAGAAGGACGAAGAGAACTTGAACACCAAAGAGAGACTCCGTGTCGAAGTGAGGAAAGAACTCTCCCTGTTGGAAAGC
CGTTCTATTGACTTGGCCTCGGTGCTTCGCAGTTTGGGAATCAACGTCGGAGGTGGTTTTCGTCCAGCACCACACGAGGTGCATGCAGCTTACAAGCGAG
CCTTGCTGAAGTTCCACCCGGATCGAGCTTCGAGGACCGACATTGGGCAGCAGGTTGAGGCTGAGGAGAAGTTTAAGCTTATATCTCGAATGAAGGAGAA
GCTTTTTCTTGCTTCACTTTGTTGA
AA sequence
>Lus10036825 pacid=23171230 polypeptide=Lus10036825 locus=Lus10036825.g ID=Lus10036825.BGIv1.0 annot-version=v1.0
MRGEGLSRDRSQTGPSSGKRTLRPCKMKENFDNVVVIDVDDSDGYDGVFVIDVPKSSKKGVGLRDSSLKQNFGPSHVLRERNRVSFEGTIHIDDDEEEDK
ADSCYECDSDSSEDDDQNLGVNDMPSTSAPSNVQKDSTVDASDDCEFIGFGVWTRNLSRCRARYNEESCSRNHYGYYPDLSDSSESDSSDCEILDGSHGN
PREQWEEACKRKKKSYASKDQSDAHDKDGSSNCDKDQSGAKYRNGSSDPETERFSNPGPATESTQKVDQESVPGCSHSTSAANASPLNKGDDRSSGLDKY
PSSNEDNSRFQDPSSCKEGLWQDLVNSTFIPKSKETSRHGTATSKGIKELDLSGKQHQATQHKPETSGSGEKKRPSAELIPESHHSSDDNPVSSSSPEDA
SLCEGNIINEREKMKETAEYKRAVEEEWEARQQQLRIQAEEAQRLRKRKKAEALRILDMQRRQKQRLEEVREIQKKDEENLNTKERLRVEVRKELSLLES
RSIDLASVLRSLGINVGGGFRPAPHEVHAAYKRALLKFHPDRASRTDIGQQVEAEEKFKLISRMKEKLFLASLC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G69060 Chaperone DnaJ-domain superfam... Lus10036825
[exp]
0 1
AT2G16390 DMS1, CHR35, DR... DEFECTIVE IN RNA-DIRECTED DNA ... Lus10041963
[exp]
1.4 0.9137
AT1G74120 Mitochondrial transcription te... Lus10021146
[exp]
2.6 0.8495
AT5G47360 Tetratricopeptide repeat (TPR)... Lus10019160
[exp]
4.5 0.8476
AT1G51310 transferases;tRNA (5-methylami... Lus10038747
[exp]
4.9 0.8413
AT1G76320 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) Lus10031825
[exp]
7.3 0.8520
AT5G36210 alpha/beta-Hydrolases superfam... Lus10021758
[exp]
7.4 0.8443
AT4G24200 Transcription elongation facto... Lus10028515
[exp]
8.7 0.8535
AT3G45830 unknown protein Lus10018121
[exp]
8.9 0.8640
AT5G54930 AT hook motif-containing prote... Lus10016478
[exp]
9.5 0.8372
AT5G08120 MPB2C, ATMBP2C,... movement protein binding prote... Lus10017881
[exp]
9.8 0.8344

Lus10036825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.