Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019190 [exp] 182 / 3e-60 ND 35 / 0.002
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G109150 [exp] 48 / 3e-08 AT1G69050 49 / 2e-09 unknown protein Potri.T139662 [exp] 48 / 3e-08 AT1G69050 49 / 2e-09 unknown protein Potri.010G138700 [exp] 46 / 3e-07 AT1G69050 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036826 pacid=23171211 polypeptide=Lus10036826 locus=Lus10036826.g ID=Lus10036826.BGIv1.0 annot-version=v1.0 ATGGACCATCATCGCTGCGCAACAATGGAGGATCCTCCTCCTCCCGCTGCGCCGTCGTTTCCAGGGTTCCAGAGCTCCCTGCACAGAGACGATATGGAGT ACGAGAGAGTGCTGACTAGGCTTCAGAGACGAGCGCCTGCTCCTCTCCCACTTGATAATAAGCACATCTTCCCCACCGTTGACCCTTCTGCTGCTACTTA CACTTCTCCACCTCAAACTTGTCCCGCGAGATTCGGTTCTGCATCCGGGTCCGGTTCTTCCAAGAAGGGTGGTGGTGGTGGTGGTAAGCAAGATCCGATT CCTCTGCTGACGCCTCTGGTTTCGCCGACGGCTGCAGGACTGGGACAGCAGATGCAGAAGCAGGGGATTTCTTCTTTGTGCTTTGTTACACATGGAGATT GA
AA sequence Show only first row Show all	>Lus10036826 pacid=23171211 polypeptide=Lus10036826 locus=Lus10036826.g ID=Lus10036826.BGIv1.0 annot-version=v1.0 MDHHRCATMEDPPPPAAPSFPGFQSSLHRDDMEYERVLTRLQRRAPAPLPLDNKHIFPTVDPSAATYTSPPQTCPARFGSASGSGSSKKGGGGGGKQDPI PLLTPLVSPTAAGLGQQMQKQGISSLCFVTHGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036826 [exp]	0	1
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	9.3	0.9045
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	12.1	0.9043
AT3G21330	bHLH	bHLH087	basic helix-loop-helix (bHLH) ...		Lus10003500 [exp]	13.5	0.8170
					Lus10020249 [exp]	16.1	0.8765
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024362 [exp]	18.6	0.9017
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10036296 [exp]	22.2	0.8953
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	26.1	0.8950
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Lus10021846 [exp]	27.2	0.8857
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	28.8	0.8925
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10011340 [exp]	29.4	0.8713

Compare expression of checked genes

Lus10036826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.