Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69040 702 / 0 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 628 / 0 ACR5 ACT domain repeat 5 (.1.2) AT3G01990 493 / 2e-173 ACR6 ACT domain repeat 6 (.1) AT1G76990 444 / 3e-154 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G12420 425 / 9e-147 ACR8 ACT domain repeat 8 (.1) AT4G22780 392 / 9e-134 ACR7 ACT domain repeat 7 (.1) AT5G25320 381 / 7e-129 ACT-like superfamily protein (.1) AT5G65890 337 / 1e-111 ACR1 ACT domain repeat 1 (.1.2) AT2G36840 61 / 8e-10 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1) AT2G39570 54 / 1e-07 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019191 [exp] 554 / 0 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10012550 [exp] 550 / 0 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10041543 [exp] 541 / 0 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10003136 [exp] 495 / 3e-174 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 488 / 3e-171 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10028646 [exp] 460 / 3e-160 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 461 / 6e-158 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10011715 [exp] 380 / 1e-128 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10006662 [exp] 319 / 7e-106 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G138600 [exp] 759 / 0 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 746 / 0 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 745 / 0 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.001G327000 [exp] 546 / 0 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.012G083000 [exp] 501 / 1e-176 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.001G060100 [exp] 497 / 5e-175 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.015G100300 [exp] 484 / 6e-170 AT1G69040 483 / 3e-169 ACT domain repeat 4 (.1.2) Potri.003G167800 [exp] 479 / 6e-168 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.003G116600 [exp] 477 / 3e-167 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1) Potri.002G074800 [exp] 474 / 3e-166 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10036827 pacid=23171026 polypeptide=Lus10036827 locus=Lus10036827.g ID=Lus10036827.BGIv1.0 annot-version=v1.0 ATGGATGATGAGTACGAGAAGCTCTTCAGAAGACTAAACCCTCCTAGGGTTGAGATTGATAATGACGTGTGCAAGAATGCAACTGTGATTCAAGTTGATA GTGCAAACAAGCATGGGATCCTTCTGGATGTTGTTCAGATACTTACTGATCTCAATCTTATCATCACCAAAGCTTACATTTCCTCTGATGGAGGCTGGTT CATGGATGTTTTCAATGTGACAGATCAGGATGGGAACAAGATTACTGATGAAGCAATTCTCGATTACATCAGAAAGTCTTTGGGACCAGAATCATGCTTT ACATCTACAATGAGAAGTGTTGCATTCAAGCCATCACTGGACCATACAGTGATCGAGTTAACTGGGAACGACCGACCCGGTCTGCTATCAGAAGTGAGTG CTGTCCTAACTCACCTGAAGTGCAATGTGGTGAGTGCTGAGGTGTGGACACACAACACAAGGGCTGCAGCTGTGATGCAAGTGACCGATGAGGAGACCGA GTCTGCGATTACTGATCTGGAGAAGCTAGCGAGGGTCAAGGAGCTCCTTCATAACGTGCTGAGTGGTAGTAACAGGTCTAGGGGAGCTAAGACCGTTGTG TCTCACGAAGCAGCCATTCATACCGATAGGAGGCTGCACCAGATGATGTTTGCTGATAGGGACTATGAAAGGAATGGAATTGATCATGAGAAGTTAAAGC CTGATGTTACTGTGGTAAATTGGTATGACAAGGACTACTCAGTAGTGACTATAAGATGTAGAGACAGGCCAAAGCTTCTGTTTGATACTGTCTGCACTTT GACTGACATGGAGTATGTTGTGTTTCATGCCAACATTGATGCTGAAGGACCAGAAGCTTACCAGGAATACTATGTAAGGCATGTTGATGGGTCCCCTGTG AAATCTGATGCTGAGAGAGAGAGAGTCATACAATGCCTTGAGGCAGCAATTGAGAGAAGAGTATCTGAGGGTCTGAAGCTTGAGCTGTGCACAACTGATA GAGTAGGCTTACTATCAGATGTGACTCGAATCTTTCGAGAGAACAGCCTAACTGTTACAAGAGCAGAAGTGACCACAAGAGGAGGCAAAGCTCTCAACAT ATTCTACGTTCGAGAAGCTTCAGGCTGTGCCGTGGATGCTAAGACAATCGATGCTATTCGACAAGTGATTGGTCAGACAATACTCAAGGTCAAAGGTTGT CCTGACAATTCGAAGCAAGCCTCTCAGGAATCGCCAACAAGGTTCCTGTTTGGTAGCCTGTTCAAGTCCAGATCTTTTGTCAACTTTGGATTGGTTAGGT CCTATTCTTGA
AA sequence Show only first row Show all	>Lus10036827 pacid=23171026 polypeptide=Lus10036827 locus=Lus10036827.g ID=Lus10036827.BGIv1.0 annot-version=v1.0 MDDEYEKLFRRLNPPRVEIDNDVCKNATVIQVDSANKHGILLDVVQILTDLNLIITKAYISSDGGWFMDVFNVTDQDGNKITDEAILDYIRKSLGPESCF TSTMRSVAFKPSLDHTVIELTGNDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAAVMQVTDEETESAITDLEKLARVKELLHNVLSGSNRSRGAKTVV SHEAAIHTDRRLHQMMFADRDYERNGIDHEKLKPDVTVVNWYDKDYSVVTIRCRDRPKLLFDTVCTLTDMEYVVFHANIDAEGPEAYQEYYVRHVDGSPV KSDAERERVIQCLEAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLTVTRAEVTTRGGKALNIFYVREASGCAVDAKTIDAIRQVIGQTILKVKGC PDNSKQASQESPTRFLFGSLFKSRSFVNFGLVRSYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10036827 [exp]	0	1
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10008939 [exp]	1.0	0.8055
AT4G00525			unknown protein		Lus10037852 [exp]	1.7	0.7677
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019192 [exp]	2.4	0.7872
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10006178 [exp]	4.0	0.7581
AT3G05950			RmlC-like cupins superfamily p...		Lus10030047 [exp]	6.1	0.6856
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10030807 [exp]	8.8	0.7239
AT5G65205			NAD(P)-binding Rossmann-fold s...		Lus10011729 [exp]	10.6	0.7384
AT1G76190			SAUR-like auxin-responsive pro...		Lus10021825 [exp]	11.6	0.7149
AT1G30820			CTP synthase family protein (....		Lus10001218 [exp]	12.2	0.7490
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10017263 [exp]	12.5	0.7251

Compare expression of checked genes

Lus10036827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.