Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03800 433 / 1e-153 GEK1 GEKO1, D-aminoacyl-tRNA deacylases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048700 [exp] 413 / 7e-146 AT2G03800 421 / 5e-149 GEKO1, D-aminoacyl-tRNA deacylases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0408 [flax] [poplar] PUP PF04414 [flax] [poplar] tRNA_deacylase D-aminoacyl-tRNA deacylase
Representative CDS sequence Show only first row Show all	>Lus10036828 pacid=23171274 polypeptide=Lus10036828 locus=Lus10036828.g ID=Lus10036828.BGIv1.0 annot-version=v1.0 ATGGTGACCCTTTTGGTGGCGACGACCCGCGACCCGGCGTCGATCAACCCAGCAAACGCCCTTTTAGCCATCTCGTTGGAAACCACCTCCTCCTCCTCCG CCGGACCTCCTCTAAACGAGATTCAGAGCTTCATAATCGGAGACAACGTGAGGCTGCTCAAACACGGGAAAAGCATCGTGGAGGAGGACGATCTCGATCT CCGGTGGCAGGCCGCCACCGGTGAGTCCGTCGACGAGGTCATATTCTTCAGTAGACACGTCGCCGCCTCCAATCGCCCAGCCCTCACCATTCACCCAATC GGGGTGCCGCATTTGGCGGAGGGAGAAGCTCCGCCGCAGGGAGGCAAGCCCGGATGGGCGGCGCCGCCGGATCCGAGGATCGGACCTTGGATGAGACTTT TGAAGAGGATCGCCGAGTCTCGTAATCTGGTTCCTGAATTCGAGATTACTTTGGAAGCTACCCATCATGGACCAGTGACGAATAAGCCAACCATGTTCAT CGAAATTGGCAGTACTGAGGACTACTGGGATAGGCAGGATGCTGCTGAAGCCATTGCTCAATTAGTTTGGGAAGGACTAGGGCTTGGAGGAGGTGCTGCT GTAGGAACCTGGAACAGTGAGAACAAGAACAAAAGGGTCCTTCTAGGAATCGGCGGTGGGCATTATGCGCCGCGACATATGGACATAGTCATGAAAGATG ACACTGTCTGGGTGGCTCACCTCCTATCCGGGTATTCGCTACCCATGGAGGAACCAAACAAGGCAAAGGGAGGTGAAAACACAAAAGACATTGGAGGGAC CTGGAAGCAGTCTATTAGAGCTGCGGTTGAAGCTACTAAAATCGGTTTCCCCGGTGGCGAAATTTTGGCACATCTTGATCACAAGAGCTTCAAGGGTTGG CAGAAGAATGCAATAACAGCATTCCTAGGAGAGCTGAACATAAAGATAGGGAAACCTAATGATTTCCATTAA
AA sequence Show only first row Show all	>Lus10036828 pacid=23171274 polypeptide=Lus10036828 locus=Lus10036828.g ID=Lus10036828.BGIv1.0 annot-version=v1.0 MVTLLVATTRDPASINPANALLAISLETTSSSSAGPPLNEIQSFIIGDNVRLLKHGKSIVEEDDLDLRWQAATGESVDEVIFFSRHVAASNRPALTIHPI GVPHLAEGEAPPQGGKPGWAAPPDPRIGPWMRLLKRIAESRNLVPEFEITLEATHHGPVTNKPTMFIEIGSTEDYWDRQDAAEAIAQLVWEGLGLGGGAA VGTWNSENKNKRVLLGIGGGHYAPRHMDIVMKDDTVWVAHLLSGYSLPMEEPNKAKGGENTKDIGGTWKQSIRAAVEATKIGFPGGEILAHLDHKSFKGW QKNAITAFLGELNIKIGKPNDFH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03800		GEK1	GEKO1, D-aminoacyl-tRNA deacyl...		Lus10036828 [exp]	0	1
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10038904 [exp]	7.3	0.9479
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10015028 [exp]	9.3	0.9454
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10027820 [exp]	10.5	0.9430
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10043044 [exp]	17.4	0.9419
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10005048 [exp]	18.0	0.9391
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10034042 [exp]	21.2	0.9368
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	21.9	0.9373
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10008214 [exp]	23.9	0.9418
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10010506 [exp]	24.8	0.9341
					Lus10018421 [exp]	25.7	0.9377

Compare expression of checked genes

Lus10036828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.