Plant FIBer expression Database

Lus10036829 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G03810 54 / 1e-07 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
AT1G13650 42 / 0.0003 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019193
[exp]
405 / 8e-141 AT2G03810 50 / 1e-06 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Lus10026682
[exp]
159 / 9e-44 AT2G03810 100 / 9e-23 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Lus10004632
[exp]
141 / 4e-38 AT2G03810 102 / 3e-24 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G138100
[exp]
64 / 7e-11 AT2G03810 93 / 3e-20 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Potri.008G111800
[exp]
57 / 1e-08 AT2G03810 84 / 4e-17 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Potri.015G048400
[exp]
45 / 7e-05 AT2G03810 64 / 6e-11 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10036829 pacid=23170987 polypeptide=Lus10036829 locus=Lus10036829.g ID=Lus10036829.BGIv1.0 annot-version=v1.0
ATGGAGCTTGGAGAGCTGCACAAATTAAATTTCTGTGGGTTAGATACCGCTATCTATTTCTGTTTCATTCTACCATTTAATAGCCTATCAATTGAGTATC
GACTGCTGTCTTGTCTAGTGGCAGAGAGTAAGCAAGTGTCTTTCCCGGGAACTGCTGGCCAGAAGTCTGATGCCGAACCATTCAAACACATAGACGACCA
GAATGGTGTTTTAGTGCATGAGGCCAAGCTGAGGGAAGAAGACTACGTTGATCAAATCCTATATCAGACAACAAATGATGAAGCTGCAACAAAAGAAGAT
GACGACAGCGATGATATGGATGATTTAGTAGGAAATGGTGATGTGGAGCTGAGAAGATTCGTGGAGCCACTACCGTCTTTACTAGCTCGCCAAATGACTG
TTTGTAACTACGAAGACAACTCAAACTATGTTGTCAAGGACATCTGTGTGGACGAAGGGTTGCCCTTGCACGACAAGTTCTTGTTCGACACGAATATGGA
TTACGATGTTGAGTACTTGTCCACGTTTTTGTCTCCTGGGAAAGCTGGAAATAGTGAAGAAGAGGTGGTTAAAGATTCAGTTGTTGAACTTATTATTCTT
GAGCCAATTGTTCCAAATGCGTCCGTTGAAGGATCAGAAAATGCTGAAATTCGCTGTGAGGAAGCACTTAGTGAAGCATCCACAAATTCAACTGGTAATG
ATGCATCGAAAATGAGCCTTTCACTTGGAGTTTCGCTAGTACTGCTAGAAGCAGGCACAGATTGTTCTGGTCATGCCCCGTTGACCGATCAAACCAGTGG
CATTCAACACGATTCTCCTCAGGATTCTGATCCTCCTGCATCGAAAGAAACATCGTCAAATGCAGCCATTCACGAGGAAGACATTACGCCCGAAAGGCAC
AGTCTGGATTCTCTACCTTATGAACTGACCCATGAAGTCGCTGCTCGGTTATCTTTCGACACTAAATTCGATAATTCCACTGCAACAGCAACAACAGAAA
ATATTGATCCTCAGCAAGAACTCAAGACTCCGATCTCTTCCAAGATCGGTTCCAAACCGGCTCCTTACTCAGGAAGCATCTCCATGAGATCAGACAGCAG
CACGACCAGCACTCGCTCTTTCGCTTTCCCAGTATTACAGAATGAATGGAACGCTAGTCCGGTCAGGATGGCGAAAGCTGACAGGAGACATCTCAGGAAG
CACAGGCGTTGGAGGCAGAGCATCCTCTGCTGTAAATTTTGA
AA sequence
>Lus10036829 pacid=23170987 polypeptide=Lus10036829 locus=Lus10036829.g ID=Lus10036829.BGIv1.0 annot-version=v1.0
MELGELHKLNFCGLDTAIYFCFILPFNSLSIEYRLLSCLVAESKQVSFPGTAGQKSDAEPFKHIDDQNGVLVHEAKLREEDYVDQILYQTTNDEAATKED
DDSDDMDDLVGNGDVELRRFVEPLPSLLARQMTVCNYEDNSNYVVKDICVDEGLPLHDKFLFDTNMDYDVEYLSTFLSPGKAGNSEEEVVKDSVVELIIL
EPIVPNASVEGSENAEIRCEEALSEASTNSTGNDASKMSLSLGVSLVLLEAGTDCSGHAPLTDQTSGIQHDSPQDSDPPASKETSSNAAIHEEDITPERH
SLDSLPYELTHEVAARLSFDTKFDNSTATATTENIDPQQELKTPISSKIGSKPAPYSGSISMRSDSSTTSTRSFAFPVLQNEWNASPVRMAKADRRHLRK
HRRWRQSILCCKF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G03810 18S pre-ribosomal assembly pro... Lus10036829
[exp]
0 1
AT2G03810 18S pre-ribosomal assembly pro... Lus10019193
[exp]
4.7 0.8090
AT1G67623 F-box family protein (.1) Lus10038709
[exp]
6.3 0.7638
AT5G06440 unknown protein Lus10016186
[exp]
7.5 0.8195
AT2G03620 AtMRS2-5, AtMGT... magnesium transporter 3 (.1.2) Lus10036901
[exp]
10.4 0.7106
AT3G56710 SIB1 sigma factor binding protein 1... Lus10039494
[exp]
14.2 0.7754
AT1G17840 AtABCG11, WBC11... DESPERADO, CUTICULAR DEFECT AN... Lus10023154
[exp]
16.4 0.8010
AT3G47570 Leucine-rich repeat protein ki... Lus10004827
[exp]
18.7 0.7862
AT5G06440 unknown protein Lus10013601
[exp]
19.2 0.7150
AT5G41410 HD BEL1 BELL 1, POX (plant homeobox) f... Lus10017513
[exp]
20.7 0.7997
AT5G49720 TSD1, IRX2, DEC... TUMOROUS SHOOT DEVELOPMENT 1, ... Lus10026275
[exp]
30.0 0.7078

Lus10036829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.