Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02250 537 / 0 O-fucosyltransferase family protein (.1) AT5G15740 535 / 0 RRT1 O-fucosyltransferase family protein (.1) AT1G14020 479 / 1e-165 O-fucosyltransferase family protein (.1) AT2G03280 463 / 1e-159 O-fucosyltransferase family protein (.1.2) AT2G37980 378 / 3e-124 O-fucosyltransferase family protein (.1) AT5G64600 367 / 9e-122 O-fucosyltransferase family protein (.1) AT3G54100 365 / 2e-119 O-fucosyltransferase family protein (.1) AT5G01100 360 / 2e-117 O-fucosyltransferase family protein (.1) AT5G35570 354 / 5e-115 O-fucosyltransferase family protein (.1) AT1G22460 348 / 2e-113 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019196 [exp] 955 / 0 AT5G15740 541 / 0.0 O-fucosyltransferase family protein (.1) Lus10007975 [exp] 546 / 0 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 543 / 0 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 543 / 0 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 534 / 0 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 531 / 0 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 528 / 0 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 485 / 5e-168 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 483 / 7e-167 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G101300 [exp] 538 / 0 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 531 / 0 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 530 / 0 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 520 / 0 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 480 / 3e-166 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 475 / 3e-164 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 374 / 3e-124 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 372 / 3e-123 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 364 / 2e-120 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 359 / 4e-116 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036833 pacid=23171347 polypeptide=Lus10036833 locus=Lus10036833.g ID=Lus10036833.BGIv1.0 annot-version=v1.0 ATGGCAATTCAGGCAGTTTTGGAAAACAAAACTACCAAGGTTGCTGTCCCTGGGGAGAAAGATGACGGCAAGATAGAATTAAAGAAGAAGATTGGACCTG GTAAGATCAGAAGGTTGAAGCTCAAGAACCTGATCACCAGGGCGGCGAAAGCTCACAAGTCGAATTCGAACAATGTTGGTTCTGGTTCCGGCTTGTTCGG TGAATCGAGGACTTTATCTGTAGGGATCACGTTGATGGTGATTGTGATGTGGGCTTGCGCAATGCAGTCAATTTTGTTTCGGAATGTCGAATGGAGAAGA ATGAGTGTCAAGTTTCTGAATCCTGCTGCTTCACTTCTGATACCTGAAAGAGTTTACCACAACAATGGATACCTGACTGTTTCGTCGAATGGAGGATTGA ATCAAATGCGGTCAGGAATTTCAGACATGGTTACAATAGCAAGATTCCTGAACCTTACACTTGTGGTTCCTGAACTTGACAACACCTCCTTCTGGCAAGA TAGCAGTCAGTTTGCAGACATATTTAATGTGGATCACTTCATCAACTCATTGAGGGATGAGCTCAAGATTGTCAAAGAGCTGCCGCCTGTACAGAAGCAA CAGCTCGAGAATCGGCCGCTTTACCAAATGGCAACTCGTAGCTGGTCTAACATGTCCTATTATCGCGAGACGGTTCTGCCAGTCTTCAGAAAGCATGGAA TAGTCCGATTCCTGAAGACCGATGCTAGACTTTCGAACAACGAGCTTCCTGAGGAGGTTCAGAAGATGAGATGCAGGGTTAACTATGAAGGTCTCAAGTT CACTCCATCGTTGGAGAAGATAGGAAAGAAGGTTGTAAGAATCCTGAGGAAGAAAGGTCCATTCTTGGCTCTTCATCTCAGATATGAAAAGGATATGCTG GCATTCACAGGTTGTACAAAGGAGCTTAACAAACATCAAGTTCGAGAGCTTACATCGATGAGGTTTGCATGTCCATGGTGGAAAGAGAAAGGTATAAACT CAACCAAGAAAAGGGAAGATGGGTTATGCCCTTTGACACCAGGGGAGGTTGGACTTGCACTCAAGGCTCTTGACATTGATCCCAAGATCCAAGTCTACAT TGCTGCTGGAGAAATCTATGGAGGGAAGAAGCCACTCGACGATCTTCGAACTTTCTATCCGAATCTGGTGAAGAAGGAAAGGTTGCTACCAGCATCCGAC TTGGCAGACATTAAAAACCACTCCAACAGAATGGCCGCAGTGGATTACATTGTGTCATTAGCAAGCGACATATTCTCCCCAAGCTACGATGGCCACATGG CCAAAGTTGTCGAAGGCCACCGCCAGTATCTTGGATACAAGAGAACCATTAGGCTAGATAGAAAGGTTCTAGTGACACTTATAGACAAGTACAAAAGTGG TATGATTAGCTGGGACGAATTTTCGAGATCGGTGAAGGCAGCACACAGGGGGCTAATGGGTGGCCCAATTGAGAGACTGAAGATCCCTGGCAAACCAAAA GAAGAAGATTATTTCTACATAGATCCTGAGGAATGCTTGCCACCAATTATTCATCCTTCAAGGGGTAAAAGAAGTTCAAGCAAGAGAAAGCCTTAA
AA sequence Show only first row Show all	>Lus10036833 pacid=23171347 polypeptide=Lus10036833 locus=Lus10036833.g ID=Lus10036833.BGIv1.0 annot-version=v1.0 MAIQAVLENKTTKVAVPGEKDDGKIELKKKIGPGKIRRLKLKNLITRAAKAHKSNSNNVGSGSGLFGESRTLSVGITLMVIVMWACAMQSILFRNVEWRR MSVKFLNPAASLLIPERVYHNNGYLTVSSNGGLNQMRSGISDMVTIARFLNLTLVVPELDNTSFWQDSSQFADIFNVDHFINSLRDELKIVKELPPVQKQ QLENRPLYQMATRSWSNMSYYRETVLPVFRKHGIVRFLKTDARLSNNELPEEVQKMRCRVNYEGLKFTPSLEKIGKKVVRILRKKGPFLALHLRYEKDML AFTGCTKELNKHQVRELTSMRFACPWWKEKGINSTKKREDGLCPLTPGEVGLALKALDIDPKIQVYIAAGEIYGGKKPLDDLRTFYPNLVKKERLLPASD LADIKNHSNRMAAVDYIVSLASDIFSPSYDGHMAKVVEGHRQYLGYKRTIRLDRKVLVTLIDKYKSGMISWDEFSRSVKAAHRGLMGGPIERLKIPGKPK EEDYFYIDPEECLPPIIHPSRGKRSSSKRKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02250			O-fucosyltransferase family pr...		Lus10036833 [exp]	0	1
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	1.7	0.8875
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10015930 [exp]	4.0	0.8489
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10013219 [exp]	4.9	0.8733
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10042680 [exp]	5.8	0.8111
AT2G04220			Plant protein of unknown funct...		Lus10027127 [exp]	5.8	0.8743
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	6.0	0.8596
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10025719 [exp]	10.5	0.8412
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10015766 [exp]	11.3	0.8297
AT4G31805			WRKY family transcription fact...		Lus10024451 [exp]	15.4	0.8266
AT1G72100			late embryogenesis abundant do...		Lus10041310 [exp]	18.2	0.7581

Compare expression of checked genes

Lus10036833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.