Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03890 867 / 0 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT1G26270 822 / 0 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT1G13640 787 / 0 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT3G56600 353 / 2e-114 Protein kinase superfamily protein (.1.2) AT2G40850 350 / 9e-113 ATPI4KGAMMA1 ,PI4K GAMMA 1 phosphoinositide 4-kinase gamma 1 (.1) AT2G46500 216 / 8e-62 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT5G24240 211 / 3e-60 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) AT1G64460 203 / 4e-60 Protein kinase superfamily protein (.1) AT1G27570 67 / 3e-11 phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT3G43950 46 / 2e-05 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019197 [exp] 1254 / 0 AT2G03890 873 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10005095 [exp] 702 / 0 AT2G03890 700 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10000012 [exp] 232 / 5e-73 AT1G26270 122 / 3e-33 Phosphatidylinositol 3- and 4-kinase family protein (.1) Lus10000011 [exp] 223 / 8e-70 AT1G26270 122 / 5e-33 Phosphatidylinositol 3- and 4-kinase family protein (.1) Lus10018104 [exp] 220 / 2e-63 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10003190 [exp] 217 / 7e-63 AT2G46500 587 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10001817 [exp] 218 / 2e-62 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10022411 [exp] 218 / 3e-62 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10030251 [exp] 208 / 9e-62 AT2G46500 484 / 3e-170 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137400 [exp] 971 / 0 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.008G112200 [exp] 915 / 0 AT2G03890 866 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.017G101500 [exp] 693 / 0 AT2G03890 737 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.006G031600 [exp] 375 / 2e-122 AT2G40850 489 / 2e-168 phosphoinositide 4-kinase gamma 1 (.1) Potri.012G014600 [exp] 224 / 9e-65 AT5G24240 767 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.015G013600 [exp] 221 / 3e-63 AT5G24240 747 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.014G099000 [exp] 213 / 7e-61 AT2G46500 784 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.001G090300 [exp] 212 / 2e-60 AT2G46500 699 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00454 [flax] [poplar] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Lus10036834 pacid=23171310 polypeptide=Lus10036834 locus=Lus10036834.g ID=Lus10036834.BGIv1.0 annot-version=v1.0 ATGTCTCGGAAGTTGGACAGCCCAGTTCAGACACAAATGGCGGTTTCAGTCTTCAAGAGCCCTCTCGCTGGCGAGCATCATCACGGGAAGCAACTTGCTG GGAGGAGGCGAGTTTTCGTGCAGACCGAGACTGGTTTCGTACTGGGGATGGATCTGGACCGAAGTGACAATGCTCATACCGTGAAGAGGAGGCTCTCGGT CGCTCTGAATGTCTCGACAGAGGAGAGTTCTCTGACTTTCGGTGATGTGGTGCTGAAGAACGACCTCAGTGCAGTTCGTAACGATTCGCCGCTCCTTTTG ACTCGCAACTATCTCCACAGAAGCTCATCCACTCCGTGCCTCTCCCCCACTGGGAAGGACATTCAGAAGAAGGATCAGAGCGCGCTTATCGAGGTTTTAG GGCATGGACATTCGGATAGCTTCTCGAAGATGAAGCAGCTGGTTAAGGAGAGTGTGAAGGCTATGAAGATGGGTGTCGATCCTCACCCGGTCCATGGTGG GCTCGGAGGTGCCTACTTCTTCAGGAACAGTAGAGGGGAGAATGTTGCGATTGTGAAGCCGACTGACGAAGAGCCATTTGCTCCGAACAATCCGAAAGGT TTCGTTGGGAAGGCTCTTGGACAGCCTGGTTTGAAACGTTCTGTTCGGGTTGGAGAGACTGGGATTCGAGAAGTTGCTGCTTACCTTCTTGACCACGGCC ATTTCGCCTGTGTTCCTCCTACTGCTCTGGTGAAGATCACTCACTCGATCTTCAACATCAATGATTCGGTGAACAATGGCGGTAATGGTAATGGTAAAGC TCAAAGCAAGAAGCAGGTGAGCAAGATTGCGTCTTTCCAGCAGTTCATTCAGCACGATTTCGATGCCAGCGATTACGGGACTTCAAGCTTCCCTGTCTCG GCTGTGCACCGTATAGGTATATTGGATATTAGGATTTTCAACACGGATAGGCACGGTGGGAATCTCTTGGTGAAGAAGCTTGATGGTGTTGGTAGATTCG GACAAGTGGAACTGATTCCTATCGATCACGGTCTTTGCTTACCGGAGACGTTGGAGGATCCGTATTTCGAATGGATTCATTGGCCGCAGGCTTCGATTCC TTTCTCGGAAGGCGAGATTGAGTACATTGCTAAGCTAGACCCTACTGAGGATTGTCTGATGTTGCGGAAAGAGCTCCCGATGATCCGAGAGGCTTGTCTT AGGGTGTTGCATCTCTGCACGATTTTCCTCAAGGAAGCTGTCACTTATGGTCTTTGTCTTGCTGAGATCGGCGAGATGATGAGTAGAGAGTTTCGGTCTG GTGAGGAGGAACCCAGTGAGCTTGAGGTTCTGTGCATGGAGGCTAGGAGACTGATAGTGGAGAGGGAGGTGCTGTCTCCGAGAACTGATGTTGGAGATTC GGAGTTCCTCTTTGACATCGATTGCGAGGAAGTCAATCACGACCGTGATCATGACTTCTCGACCAAGATGACTGCTGATGAGTACATGTACAGGCCACCG TACCAATTCGGGCTTGGGAACGGGATGGGTCGTAGCATGCTTTCAAAGCTTGACGAAAGCGTAGAGGAGGAGGAAGAAGAAGAGAGCGAAGGAGAGGACG GGCGAGAGGAATTTGCGGCAGCTCTCCCTGCTGCTGCTCCAGTGAACTTCCCGTCGATCTCCATGCTCTCTGCATCTCTGAAGGATACAAAGCTGAGTGA CAAGACTCCCAAGTACCCGAAATTCTCGGGGCTTGCCAAGCCGGAGAATGGGTACACAGTAACAAACTCGTCATCAGGGCACAGGAGTGCGAACGAGCAG CTTCCTTCGAGTGTGAGCTTTGTGAACCTTGTGGATATGCCTGATGAGGAGTGGGGGATGTTCATGGAAAAGCTTCAGGAGCTGCTGTATCCAGCGTTTG CAAAGCGAAAGTCTGTGACTTTAGGGCAGAAACTGAGGCAGAGGCTTGGGACTTCATGCCAGTTTTGA
AA sequence Show only first row Show all	>Lus10036834 pacid=23171310 polypeptide=Lus10036834 locus=Lus10036834.g ID=Lus10036834.BGIv1.0 annot-version=v1.0 MSRKLDSPVQTQMAVSVFKSPLAGEHHHGKQLAGRRRVFVQTETGFVLGMDLDRSDNAHTVKRRLSVALNVSTEESSLTFGDVVLKNDLSAVRNDSPLLL TRNYLHRSSSTPCLSPTGKDIQKKDQSALIEVLGHGHSDSFSKMKQLVKESVKAMKMGVDPHPVHGGLGGAYFFRNSRGENVAIVKPTDEEPFAPNNPKG FVGKALGQPGLKRSVRVGETGIREVAAYLLDHGHFACVPPTALVKITHSIFNINDSVNNGGNGNGKAQSKKQVSKIASFQQFIQHDFDASDYGTSSFPVS AVHRIGILDIRIFNTDRHGGNLLVKKLDGVGRFGQVELIPIDHGLCLPETLEDPYFEWIHWPQASIPFSEGEIEYIAKLDPTEDCLMLRKELPMIREACL RVLHLCTIFLKEAVTYGLCLAEIGEMMSREFRSGEEEPSELEVLCMEARRLIVEREVLSPRTDVGDSEFLFDIDCEEVNHDRDHDFSTKMTADEYMYRPP YQFGLGNGMGRSMLSKLDESVEEEEEEESEGEDGREEFAAALPAAAPVNFPSISMLSASLKDTKLSDKTPKYPKFSGLAKPENGYTVTNSSSGHRSANEQ LPSSVSFVNLVDMPDEEWGMFMEKLQELLYPAFAKRKSVTLGQKLRQRLGTSCQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10036834 [exp]	0	1
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10019197 [exp]	1.0	0.9357
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	3.0	0.8338
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10018426 [exp]	6.0	0.8292
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	8.1	0.8005
AT3G11240		ATATE2, ATE2	arginine-tRNA protein transfer...		Lus10040189 [exp]	9.2	0.7963
AT3G58750		CSY2	citrate synthase 2 (.1)		Lus10031384 [exp]	9.2	0.8100
AT1G60670			Protein of unknown function (D...		Lus10030566 [exp]	13.5	0.7728
AT4G29270			HAD superfamily, subfamily III...		Lus10011140 [exp]	14.5	0.7331
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10024411 [exp]	15.2	0.8438
AT4G29270			HAD superfamily, subfamily III...		Lus10043042 [exp]	18.1	0.7266

Compare expression of checked genes

Lus10036834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.