Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13635 216 / 5e-69 DNA glycosylase superfamily protein (.1.2) AT5G57970 141 / 7e-40 DNA glycosylase superfamily protein (.1.2) AT1G75090 140 / 1e-39 DNA glycosylase superfamily protein (.1) AT5G44680 137 / 5e-38 DNA glycosylase superfamily protein (.1) AT1G15970 131 / 5e-36 DNA glycosylase superfamily protein (.1) AT1G80850 127 / 2e-34 DNA glycosylase superfamily protein (.1) AT3G12710 124 / 2e-33 DNA glycosylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019199 [exp] 327 / 3e-113 AT1G13635 222 / 2e-71 DNA glycosylase superfamily protein (.1.2) Lus10019198 [exp] 273 / 4e-93 AT1G13635 300 / 4e-103 DNA glycosylase superfamily protein (.1.2) Lus10026083 [exp] 131 / 5e-36 AT5G57970 308 / 6e-104 DNA glycosylase superfamily protein (.1.2) Lus10002310 [exp] 129 / 3e-35 AT1G80850 299 / 3e-100 DNA glycosylase superfamily protein (.1) Lus10036248 [exp] 107 / 5e-27 AT5G44680 383 / 4e-133 DNA glycosylase superfamily protein (.1) Lus10038388 [exp] 100 / 2e-24 AT5G57970 256 / 6e-84 DNA glycosylase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137300 [exp] 234 / 5e-76 AT1G13635 380 / 7e-133 DNA glycosylase superfamily protein (.1.2) Potri.008G112300 [exp] 222 / 2e-71 AT1G13635 372 / 9e-130 DNA glycosylase superfamily protein (.1.2) Potri.006G184700 [exp] 152 / 2e-43 AT5G57970 473 / 8e-168 DNA glycosylase superfamily protein (.1.2) Potri.018G106900 [exp] 151 / 2e-43 AT5G57970 418 / 2e-146 DNA glycosylase superfamily protein (.1.2) Potri.014G041700 [exp] 143 / 1e-40 AT1G75090 332 / 2e-113 DNA glycosylase superfamily protein (.1) Potri.003G182300 [exp] 142 / 3e-40 AT5G57970 286 / 1e-94 DNA glycosylase superfamily protein (.1.2) Potri.002G133800 [exp] 136 / 6e-38 AT1G75090 333 / 7e-114 DNA glycosylase superfamily protein (.1) Potri.003G156500 [exp] 132 / 8e-36 AT5G44680 370 / 8e-127 DNA glycosylase superfamily protein (.1) Potri.010G175300 [exp] 131 / 2e-35 AT3G12710 372 / 1e-128 DNA glycosylase superfamily protein (.1) Potri.008G081000 [exp] 129 / 7e-35 AT5G44680 390 / 6e-135 DNA glycosylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03352 [flax] [poplar] Adenine_glyco Methyladenine glycosylase
Representative CDS sequence Show only first row Show all	>Lus10036835 pacid=23171045 polypeptide=Lus10036835 locus=Lus10036835.g ID=Lus10036835.BGIv1.0 annot-version=v1.0 ATGTTCAGGAATAAGGAGAGTAACAACAACGACAACAACAACAATAAGCAGGAATGTTGCTACAAGAAGAGGCAGCAGCAGGCAGCAATTGCAAGCATAT TCTCATACAAGCACTTGAAGAAAGTTTACCCTGTTGGCCTTAACAGAAGCTCTTCTTCTCTATCTTCTATTTCGTCTTCGTCTTCTTTGTCATTGTCTCT GTCCCAGAACTCTAATGAGGACTCTTCTTCTTCACTCATCGACGGCCCATCTTCAACATCTCCTCTTGAGAATAAAGTCTCCCTAACTCTTCGACTCATT GCTCTCTCGCCAAAGAGGGGTCCACCACCATCCCCTCCACGATGGGAGGAGGCTCACGATGGTGGTGGTGGTTGTGAGGATGAAGGTGGGCCGAGGAAGT GTTATTGGATAACTAAGAATAGTGTGGCCAAAATGGATGAAAATGAAATCATGGACATTGTCTCCGATAAGGCCATATCCTTAGCTGAATGCAGAGTTCG ATGCATAGTCGACAATGCCAAATGCATCCTCAAGATAGTTAGAGAATTTGGATCGTTCAGTAGCTACATGTGGGGCCACATGAACCACAAGCCAACGATC AACAAGTTCAGGTACCCTAGAAACGTGCCGTTGAGATCACCAAAGGCGGAGGCGATGAGCAGGGAGTTATTGAGACGTGGGTTTAGATTCGTCGGACCGG TGATCGTTTACTCATTCATGCAAGCGGCCGGTTTGACCATAGACCACCTCGTCGACTGCTTTAGGTATAAGGAATGTGTCGCGCTTGCTGAGCGACCTTG GAGGCATATGTGA
AA sequence Show only first row Show all	>Lus10036835 pacid=23171045 polypeptide=Lus10036835 locus=Lus10036835.g ID=Lus10036835.BGIv1.0 annot-version=v1.0 MFRNKESNNNDNNNNKQECCYKKRQQQAAIASIFSYKHLKKVYPVGLNRSSSSLSSISSSSSLSLSLSQNSNEDSSSSLIDGPSSTSPLENKVSLTLRLI ALSPKRGPPPSPPRWEEAHDGGGGCEDEGGPRKCYWITKNSVAKMDENEIMDIVSDKAISLAECRVRCIVDNAKCILKIVREFGSFSSYMWGHMNHKPTI NKFRYPRNVPLRSPKAEAMSRELLRRGFRFVGPVIVYSFMQAAGLTIDHLVDCFRYKECVALAERPWRHM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13635			DNA glycosylase superfamily pr...		Lus10036835 [exp]	0	1
AT1G13635			DNA glycosylase superfamily pr...		Lus10019198 [exp]	1.0	0.9929
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017863 [exp]	3.2	0.9827
AT1G13635			DNA glycosylase superfamily pr...		Lus10019199 [exp]	3.5	0.9757
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10018637 [exp]	4.2	0.9766
AT1G27920		MAP65-8	microtubule-associated protein...		Lus10015789 [exp]	5.9	0.9687
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	6.0	0.9745
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10035836 [exp]	9.2	0.9751
AT5G55970			RING/U-box superfamily protein...		Lus10016652 [exp]	11.0	0.9672
AT1G22030			unknown protein		Lus10019943 [exp]	12.0	0.9668
AT5G43230			unknown protein		Lus10015804 [exp]	12.5	0.9448

Compare expression of checked genes

Lus10036835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.