Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13630 672 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G01110 265 / 6e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 265 / 6e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 259 / 1e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 257 / 3e-74 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 250 / 1e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 248 / 5e-72 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G59900 253 / 2e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 243 / 4e-69 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G62670 240 / 8e-69 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019200 [exp] 1569 / 0 AT1G13630 690 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036839 [exp] 1501 / 0 AT1G13630 673 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10000029 [exp] 238 / 2e-74 AT1G13630 85 / 2e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036020 [exp] 253 / 4e-72 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 252 / 1e-70 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 244 / 3e-70 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10010410 [exp] 249 / 4e-70 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 247 / 4e-70 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039056 [exp] 243 / 1e-68 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137200 [exp] 886 / 0 AT1G13630 805 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G046000 [exp] 272 / 5e-80 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G217600 [exp] 270 / 2e-78 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 261 / 5e-76 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G234500 [exp] 261 / 1e-75 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G368700 [exp] 258 / 2e-72 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 253 / 1e-71 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 246 / 2e-71 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.015G105400 [exp] 254 / 3e-71 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 248 / 7e-71 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036836 pacid=23170991 polypeptide=Lus10036836 locus=Lus10036836.g ID=Lus10036836.BGIv1.0 annot-version=v1.0 ATGCTCAGAAGATGGAGAGTCCCCCTTTGTCGTCTTCGATTCTCATCCAAATCCCCAACACTCGCCTCTCTATGTTCATTCGTCTTCCCCAAACCTTCCA TCTCCACCGTCGCTGCTGCGTCGACTTCCGGAAGTTCTGTTGCTCCGTTGGAGAGCCATGGAGACTACAACATCATCCGCGAGATTGTGTACGGGGTTAC TCACTTGGGTTTTCGGGACGTCCAATTGAAGGGCTTGATAGCAATGCTGAGCACGGAGCAGGTTGATTCAGTGATCGAAGCTTTGAGCTATCAGAACGGT AAATCCGCTGTGGATTTCTTCCATTTTTTGAGGAAAGAGTTCGGGTTTCGGCACTCAATTGCTTCGTCCCTTATCGTCTCCCATGTTTTAGAGGGAAGAA TGATGTTCAGGGAGCTGAAAAATGTCGTCGATCAGATGCTACGAGAAGAAGGATCTGGTTCTGCTCCTATAATTTGTGAGCTGCTCTCGGGTAGTAGGCT TAAGTGTTGTGATTCGACCAATTGGGTATGGGATGTGTTGGCGTTCGCTTATTCGAGATTCAAGATGGTTCACGATGCTCTCTATGTATTGGTAACGATG AAGGATTTGGGTTTTCGGGCTTCTGTGCAGACTTATAATAGTCTCATGTACAATTTGAGACACACTGACACTGTATGGGACGTGTTTAACGATATCAAAG CTAGCGGTTCTAGTCCGAATGAGCACTCCAGTTCGATTCTCGTGGATGGTTTATGCAGGCAGTCTAGGTTACCACAGGCGGTTTCATTCATCTGTGGTGG CGAAGATCATGATCATGCCCCTTCAGTTGTTTCGATCAACACAGTGATGTCAAGGTACTGTAAATTGGGGTTCGTAGAAGTAGCAAAGTCATTCTTCTGT CTGATGCTGAAATATGGATTGCTTCCTGATGCATATAGCTATAATATTCTCATTCACGGGTTGTGTATAGCTGGCTCGATGGAGGAAGCACTCGAGGTTG CGAGTTGTATGGAGGTTCGAGGTGTACAGCCTGATATAGTAACATACAACGTTCTAGCTAAAGGTTTGCATCTACTAGGGTTGATGAGTGGAGCTACAAA GATGATTGAAGATATGGTACTGAAAGAACGAGATTTAGACAGTGTTACCTATATGATACTGATCTATGGTCATTGCCAAGCTGGGAACGTTTCAGAGGCA TTGAAGCTCTACAAGGAGATGTTCTCACGGGGTCTTCAGTTGAGCATCCTCTCGTTAAGCTTATTGCTCTGTAGTTTATGTAAAATAGGGGAAACAGATG AAGCATTAAGGATGTTCTCTGCAATGGAAGATAACGGGTTGAAACCTGATATTGTAACGTATTCTGTTCTCATCCATGGGCTTTGTAAGCAAGGAGAAGT ACAGCAAGCTATTCATGTATACAATAAGATGTGTTGTAATGGAATATCTCCAAGCTCTTTAGATCATTGTGCTATTTTGAGGAGTTTTAGGGATAAAGGA ATGATACCTGAAGCTAGGACATACTTCAATTCTTTACTGGCTGCCGATGACTGTAGATTGGATATTGTTCTGTATAATGTCATGATCGATGCATACGGGA AACATGGAGATATCGAGGAGGCCCTGCAGTTGTACAGACAAATAACTGAGATGGGTATATTTCCCAGCGTAGTGACTTTCAATTCTCTTATTTATGGACT ATGTGCTGATGGAATGGTTGATCAGGCTATAAACTTGTTACATACTATCAAGCTGCATGGATTGGTGCCAAACGCGGTAACTTACACGACGATTATGAAC GTGTTCGCTGAAGGTGGAGATCTTCTAAATGTAATGGCATTGCTGCAGGAGATGAAGAGAAACAACGTGAAACCGTCTCACATCACTTATACCGTGCTGA TAAAAGCATACTGCAGAGAATGGAAGCTGCAGGAGGCTCTCTATTTTCTTGAGGAGATGAAAGCAGAAGGGCTAACTCCTGATGCAATCACTTATAATAT CATTACCTGGCATTTATGCAAATCGAAGAACTTGTCTGGAGCTTTCAGTTTGGTCGAAGAGATGTTGACACATAACCTTCAACCAACCCCTGCCACGTAC AACATACTTATCCACGGGCTCTGTGTATGTGGTGATCTGAGAAGTGCTAACAAGCTTCTGATCTCTCTTCAACAGGAGATGAATGTCAAGCTGACAAAAG TTGCTTACACCACGCTGATCAAGGCATACTGTGCAAAGAGTGGTGATATTGAGAGGGCGGTGGTATTGTTCCATCAAATGCTGGAAAATGGGTTCAATGT CTCAATTAGAGACTACAGCGCGGTCATCAATCGGTTGTGCAAAAGAAATTTTGTAGTTGAAGCCAAATACTTTCTGCAGATGATGTTATGCAATGACGTT TTCCCTGATTGGGATATCTGTCATATGATGATTACTACACTACACAGTAACAGCCATTTCGATCAAGTAGCTGAGTTGCTTGCTATCGCAATCAAGTTTG GTTGTATCGTGGAAAGTTGA
AA sequence Show only first row Show all	>Lus10036836 pacid=23170991 polypeptide=Lus10036836 locus=Lus10036836.g ID=Lus10036836.BGIv1.0 annot-version=v1.0 MLRRWRVPLCRLRFSSKSPTLASLCSFVFPKPSISTVAAASTSGSSVAPLESHGDYNIIREIVYGVTHLGFRDVQLKGLIAMLSTEQVDSVIEALSYQNG KSAVDFFHFLRKEFGFRHSIASSLIVSHVLEGRMMFRELKNVVDQMLREEGSGSAPIICELLSGSRLKCCDSTNWVWDVLAFAYSRFKMVHDALYVLVTM KDLGFRASVQTYNSLMYNLRHTDTVWDVFNDIKASGSSPNEHSSSILVDGLCRQSRLPQAVSFICGGEDHDHAPSVVSINTVMSRYCKLGFVEVAKSFFC LMLKYGLLPDAYSYNILIHGLCIAGSMEEALEVASCMEVRGVQPDIVTYNVLAKGLHLLGLMSGATKMIEDMVLKERDLDSVTYMILIYGHCQAGNVSEA LKLYKEMFSRGLQLSILSLSLLLCSLCKIGETDEALRMFSAMEDNGLKPDIVTYSVLIHGLCKQGEVQQAIHVYNKMCCNGISPSSLDHCAILRSFRDKG MIPEARTYFNSLLAADDCRLDIVLYNVMIDAYGKHGDIEEALQLYRQITEMGIFPSVVTFNSLIYGLCADGMVDQAINLLHTIKLHGLVPNAVTYTTIMN VFAEGGDLLNVMALLQEMKRNNVKPSHITYTVLIKAYCREWKLQEALYFLEEMKAEGLTPDAITYNIITWHLCKSKNLSGAFSLVEEMLTHNLQPTPATY NILIHGLCVCGDLRSANKLLISLQQEMNVKLTKVAYTTLIKAYCAKSGDIERAVVLFHQMLENGFNVSIRDYSAVINRLCKRNFVVEAKYFLQMMLCNDV FPDWDICHMMITTLHSNSHFDQVAELLAIAIKFGCIVES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10036836 [exp]	0	1
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10036839 [exp]	16.1	0.8524
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10005385 [exp]	16.4	0.8550
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001170 [exp]	16.6	0.8554
AT2G07750			DEA(D/H)-box RNA helicase fami...		Lus10034110 [exp]	24.7	0.8317
AT4G01860			Transducin family protein / WD...		Lus10009986 [exp]	34.6	0.8332
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10021705 [exp]	36.1	0.8439
AT4G01860			Transducin family protein / WD...		Lus10038045 [exp]	36.4	0.8284
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023907 [exp]	38.8	0.7631
AT3G11964			RNA binding;RNA binding (.1)		Lus10029327 [exp]	41.4	0.8400
AT3G14120			unknown protein		Lus10015675 [exp]	42.8	0.8399

Compare expression of checked genes

Lus10036836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.