Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13620 41 / 5e-05 RGF2 root meristem growth factor 2, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036841 [exp] 239 / 4e-82 ND 42 / 2e-05 Lus10019202 [exp] 161 / 2e-51 AT1G13620 44 / 4e-06 root meristem growth factor 2, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G112400 [exp] 39 / 0.0005 AT2G04025 42 / 1e-05 root meristem growth factor 3, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036838 pacid=23171174 polypeptide=Lus10036838 locus=Lus10036838.g ID=Lus10036838.BGIv1.0 annot-version=v1.0 ATGAAGATTTCCTCCTCGTCGTTGTCTTTTACGGCTAATTTATTGATCGTTGTTGTCGTCACCATTGTCGCTGTCACTCTGTTCTCTCGTGCTCCGACTT CCAGTTTTACTACCGTCGTTGTTGCTGACGAGATTGTGCCTTCTCATCCCATCAAGGGACCATCAAGGAATGCCACTAATGTCAAAGAGTCGAACATCGA GCCTGCGACAAAAACTGTCAAAGGGAGTGATAACAATCGAAAGGGAGATGGGAAGAGGAATAAGGAGGCTAAGCATGTTGTGAACAAAGTCGGAGGAAGG AAATCGATGAAATTTGGTTCTGCTGTTGTTGCTGATGAAACTTCTACTGATTCCTCGTCGTTTGAGACCTCGAAGCATAACTATGCAAATGATGCTAGGG CTCTTGTTGCTTTCACTTCTGATTATCGTTCTCCAAGACATCACCCTCCGAAGAACAACTAA
AA sequence Show only first row Show all	>Lus10036838 pacid=23171174 polypeptide=Lus10036838 locus=Lus10036838.g ID=Lus10036838.BGIv1.0 annot-version=v1.0 MKISSSSLSFTANLLIVVVVTIVAVTLFSRAPTSSFTTVVVADEIVPSHPIKGPSRNATNVKESNIEPATKTVKGSDNNRKGDGKRNKEAKHVVNKVGGR KSMKFGSAVVADETSTDSSSFETSKHNYANDARALVAFTSDYRSPRHHPPKNN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036838 [exp]	0	1
					Lus10036841 [exp]	1.0	1.0000
AT2G21100			Disease resistance-responsive ...		Lus10034480 [exp]	4.5	0.7359
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	6.8	0.8573
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10014342 [exp]	9.1	0.5370
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	10.7	0.7914
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	12.3	0.7914
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10016190 [exp]	13.6	0.7758
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	14.0	0.7803
					Lus10042238 [exp]	15.5	0.7671
					Lus10011637 [exp]	16.3	0.7721

Compare expression of checked genes

Lus10036838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.