Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13630 647 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G01110 261 / 2e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74580 256 / 3e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 253 / 3e-73 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 254 / 8e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 243 / 1e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 240 / 7e-70 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G59900 246 / 1e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 240 / 2e-68 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G31840 239 / 1e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036836 [exp] 1494 / 0 AT1G13630 689 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10019200 [exp] 1475 / 0 AT1G13630 690 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10000029 [exp] 238 / 4e-75 AT1G13630 85 / 2e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036020 [exp] 253 / 8e-73 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 244 / 1e-70 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10012139 [exp] 245 / 2e-69 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 242 / 6e-69 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000364 [exp] 241 / 8e-69 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037968 [exp] 246 / 1e-68 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137200 [exp] 859 / 0 AT1G13630 805 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G217600 [exp] 263 / 1e-76 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 259 / 7e-76 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G234500 [exp] 259 / 2e-75 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 250 / 1e-72 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G368700 [exp] 249 / 5e-70 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 247 / 5e-70 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 239 / 1e-69 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G276500 [exp] 242 / 2e-69 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 244 / 1e-68 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036839 pacid=23171346 polypeptide=Lus10036839 locus=Lus10036839.g ID=Lus10036839.BGIv1.0 annot-version=v1.0 ATGCTGAGCACGGAGCAGGTTGATGCAGTGATCGAAGCTTTGAGCTATCGGAACGGTGAATCCGCTGTGGATTTCTTCCATTTTTTGAGGAAAGAGTTCG GGTTTCGGCACTCAATTGCTTCGTCCCTTATCGTCTCCCATGTTTTAGAGGGAAGAATGATGTTCAGGGAGCTGAAAAATGTCGTCGATCAGATGCTACG AGAAGAAGGATCTGGTTCTGCTCCTATAATTTGTGAGCTGCTCTCTGGTAGTAGGTTTAAGTGTTGTGATTCGACCAATCAGGTATGGGATGTGTTGGCG TTTGCTTATTCAAGATTCGAGATGGTTCACGATGCTCTCTATGTTTTGGTAAAGATGAAGGATTTGGGTTTTCGGGCTTCCGTGCAGACTTATAATAGTC TCATGTACAATTTGAGACACACTGACACTGTATGGGACGTGTTTAACGATATCAAAGCTAGCGGTTCTAGTCCGAATGAGCACTCCAGTTCGATTCTCGT GGATGGTTTATGCAGGCAGTCTAGGTTACCACAGGCGGCTTCATTCATCTGTGGTGGCGAAGATTATGATCAAGTCCCTTCAGTTGTTTCGATCAACACA GTGATGTCAAGGTTCTGTAAATTGGGGTTCGTAGAAGTAGCAAAGTCATTCTTCTGTCTGATGCTGAAATATGGATTGCTTCCTGATGCATATAGCTATA ATATTCTCATTCACGGGTTGTGTATAGCTGGCTCGATGGAGGAAGCACTCGAGGTTGCGAGTTGTATGGAGGTTCGAGGTGTACAGCCTGATATAGTAAC ATACAACGTTCTAGCTAAAGGTTTGAATCTACTAGGGTTGATGAGTGGGGCTACAAAGATGATTGAAGATATGGTACTGAAACAACGAGATTTAGACAGT GTTACCTATACTATACTTCTCTATGGTCATTGCCAAGCTGGGAACGTTTCGGAGGCATTGAAGCTCTACAAGGAGATGCTCTCACGGGGCCTTCAGTTGA GCGTCCTCTCGTTAAGCTTATTGCTTTGTAGTTTATGTAAGATAGGGGAAATACATGAAGCATTAAGGATGTTCTCTGCAATGGAAGATAACGGGTTGAA ACCTGATATTGTAACGTATTCTGTTCTCATCCATGGGCTTTGTAAGCAAGGAGAAGTACAGCAAGCTATTCATGTATACAATAAGATGTGTTGTAATGGA ATATCTCCAAGCTCTTTAGATCATTGTGCTATTTTGAGGAGTTTTAGGGATAAAGGAATGATACCTGAAGCTAGGACATACTTCAATTCTTTACTGGCTG CCGATGACTGTAGATTGGATATTGTTCTGTATAATGTCATGATCGATGCATACGGGAAACATGGAGATATCGAGGAGGCCCTGCAGTTGTACAGACAAAT AACTGAGATGGGTATATTTCCCAGCGTAGTGACTTTCAATTCTCTTATTTATGGACTATGTGCTGATGGAATGGTTGATCAGGCTATAAACTTGTTACAT ACTATCAAGCTGCATGGATTGGTGCCAAACGCGGTAACTTACACGACGATTATGAACGTGTTCGCTGAAGGTGGAGATCTTCTAAATGTAATGGCATTGC TGCAGGAGATGAAGAGAAACAACGTGAAACCGTCTCACATCACTTATACCGTGCTGATAAAAGCATACTGCAGAGAATGGAAGCTGCAGGAGGCTCTCTA TTTTCTTGAGGAGATGAAAGCAGAAGGGCTAACTCCTGATGCAATCACTTATAATATCATTACCTGGCATTTATGCAAATCGAAGAACTTGTCTGGAGCT TTCAGTTTGGTCGAAGAGATGTTGACACATAACCTTCAACCAACCCCTGCCACGTACAACATACTTATCCACGGGCTCTGTGTATGTGGTGATCTGAGAA GTGCTAACAAGCTTCTGATCTCTCTTCAACAGGAGATGAATGTCAAGCTGACAAAAGTTGCTTACACCACGCTGATCAAGGCATACTGTGCAAAGAGTGG TGATATTGAGAGGGCGGTGGTATTGTTCCATCAAATGCTGGAAAATGGGTTCAATGTCTCAATTAGAGACTACAGCGCGGTCATCAATCGGTTGTGCAAA AGAAATTTTGTAGTTGAAGCCAAATACTTTCTGCAGATGATGTTATGCAATGACGTTTTCCCTGATTGGGATATCTGTCATATGATGATTACTACACTAC ACAGTAACAGCCATTTCGATCAAGTAGCTGAGTTGCTTGCTATCGCAATCAAGTTTGGTTGTATCGTGGAAAGTTGA
AA sequence Show only first row Show all	>Lus10036839 pacid=23171346 polypeptide=Lus10036839 locus=Lus10036839.g ID=Lus10036839.BGIv1.0 annot-version=v1.0 MLSTEQVDAVIEALSYRNGESAVDFFHFLRKEFGFRHSIASSLIVSHVLEGRMMFRELKNVVDQMLREEGSGSAPIICELLSGSRFKCCDSTNQVWDVLA FAYSRFEMVHDALYVLVKMKDLGFRASVQTYNSLMYNLRHTDTVWDVFNDIKASGSSPNEHSSSILVDGLCRQSRLPQAASFICGGEDYDQVPSVVSINT VMSRFCKLGFVEVAKSFFCLMLKYGLLPDAYSYNILIHGLCIAGSMEEALEVASCMEVRGVQPDIVTYNVLAKGLNLLGLMSGATKMIEDMVLKQRDLDS VTYTILLYGHCQAGNVSEALKLYKEMLSRGLQLSVLSLSLLLCSLCKIGEIHEALRMFSAMEDNGLKPDIVTYSVLIHGLCKQGEVQQAIHVYNKMCCNG ISPSSLDHCAILRSFRDKGMIPEARTYFNSLLAADDCRLDIVLYNVMIDAYGKHGDIEEALQLYRQITEMGIFPSVVTFNSLIYGLCADGMVDQAINLLH TIKLHGLVPNAVTYTTIMNVFAEGGDLLNVMALLQEMKRNNVKPSHITYTVLIKAYCREWKLQEALYFLEEMKAEGLTPDAITYNIITWHLCKSKNLSGA FSLVEEMLTHNLQPTPATYNILIHGLCVCGDLRSANKLLISLQQEMNVKLTKVAYTTLIKAYCAKSGDIERAVVLFHQMLENGFNVSIRDYSAVINRLCK RNFVVEAKYFLQMMLCNDVFPDWDICHMMITTLHSNSHFDQVAELLAIAIKFGCIVES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10036839 [exp]	0	1
AT1G56690			Pentatricopeptide repeat (PPR)...		Lus10013149 [exp]	3.9	0.8924
AT2G34357			ARM repeat superfamily protein...		Lus10041232 [exp]	8.0	0.9072
AT3G14120			unknown protein		Lus10015675 [exp]	12.2	0.8950
AT3G22690			unknown protein		Lus10006600 [exp]	12.5	0.8476
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Lus10020590 [exp]	14.1	0.8660
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10034867 [exp]	14.6	0.8581
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	16.0	0.8950
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10036836 [exp]	16.1	0.8524
AT2G34357			ARM repeat superfamily protein...		Lus10021944 [exp]	17.4	0.8950
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10007652 [exp]	19.6	0.8850

Compare expression of checked genes

Lus10036839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.