Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03490 410 / 6e-140 UDP-Glycosyltransferase superfamily protein (.1) AT1G51210 368 / 8e-124 UDP-Glycosyltransferase superfamily protein (.1) AT1G73880 360 / 4e-120 UGT89B1 UDP-glucosyl transferase 89B1 (.1) AT1G06000 217 / 3e-65 UDP-Glycosyltransferase superfamily protein (.1) AT2G36800 203 / 1e-59 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT1G10400 198 / 7e-58 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 197 / 2e-57 UDP-Glycosyltransferase superfamily protein (.1) AT2G36780 197 / 5e-57 UDP-Glycosyltransferase superfamily protein (.1) AT5G14860 196 / 8e-57 UDP-Glycosyltransferase superfamily protein (.1) AT2G16890 188 / 5e-54 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036837 [exp] 862 / 0 AT5G03490 468 / 2e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10034650 [exp] 363 / 3e-121 AT1G73880 484 / 6e-169 UDP-glucosyl transferase 89B1 (.1) Lus10007972 [exp] 250 / 2e-78 AT1G73880 355 / 1e-119 UDP-glucosyl transferase 89B1 (.1) Lus10013500 [exp] 241 / 1e-73 AT1G73880 379 / 2e-127 UDP-glucosyl transferase 89B1 (.1) Lus10026927 [exp] 232 / 2e-70 AT2G15480 310 / 2e-100 UDP-glucosyl transferase 73B5 (.1.2) Lus10020124 [exp] 229 / 3e-69 AT2G15490 301 / 4e-97 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10026926 [exp] 216 / 1e-64 AT2G15480 300 / 1e-96 UDP-glucosyl transferase 73B5 (.1.2) Lus10014402 [exp] 203 / 3e-59 AT2G36780 474 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10022220 [exp] 201 / 4e-59 AT2G16890 497 / 4e-174 UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137000 [exp] 452 / 2e-156 AT5G03490 482 / 4e-168 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G065100 [exp] 338 / 1e-111 AT1G73880 539 / 0.0 UDP-glucosyl transferase 89B1 (.1) Potri.018G009000 [exp] 218 / 2e-65 AT2G15490 323 / 6e-106 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.006G272500 [exp] 218 / 4e-65 AT2G15490 318 / 1e-103 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.006G272600 [exp] 212 / 5e-63 AT2G15490 300 / 1e-96 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.018G008900 [exp] 212 / 6e-63 AT2G15490 312 / 1e-101 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303300 [exp] 197 / 2e-57 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303700 [exp] 197 / 4e-57 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G098966 [exp] 195 / 1e-56 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.006G120600 [exp] 195 / 2e-56 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10036840 pacid=23171331 polypeptide=Lus10036840 locus=Lus10036840.g ID=Lus10036840.BGIv1.0 annot-version=v1.0 ATGGCTGGCAACTCTGTTCCTCCACCGCCCCCGTCGCCGCTGGCGCACATCCTCGTCTTCCCATACCCAGCACAAGGCCACACACTCCCACTCCTGGACC TAATCCACCACCTCCTCACCCTCCGCCGCTTCTCCGTCACCGTCGTCACCACCCCTAAGAACCTCCATTCCCTCTCGACGCTCATCTCCCTCCACCACCC TCTCCTCCGCCCCTTGATCTTCCCTTTCCCGCACCATCACCTCCTCCCCGCCGGCGTCGAGAACGTCAAGGACATCGGAAACTCCGGAAACCTCCCCATA GTCAACGCCCTCCACAAGCTATCAAACCCGATCACCGTCTGGTTTGACTCACAGCCCGACCCGAAACCAATCGCGCTGATCTCCGATTTTTTCCTCGGAT GGACTCTCTCGCTCTCCACCCGGCTTGGCATCCCTAGGTTCGCTTTCTTCAGCTCCGGAGCCTTCCTCGCCTCGCTTACGGACAAACTGTTTCGGGATCC TGTGGCAATGAGGAATTTGGATTGCATAGTGTTCGACGAATTGCCTGGCTCCCCTTCCTTCAAGGCTGAGCATCTCCCTTCCATGTTCCGACGATACGTG CCAGATGATCCCGATTGGGAGCTCGTCAGGGAAGGGGTGCTGTCGAATTTGGTCAGCCATGGCTGCATCTTCAATAGCTTCCAAGCTTTGGAAGGTCCGT CCTTCGATTTCCTAAAGGGTAAAATGGGACACGAAAATGTTTTTGCAATCGGACCGGTTAGCATGTTCGGTATTGATCGTAATCCCAATTCGAGTAGTTC AAATGTGGTCGAGTGGCTCGAACACTGTCAGGATGGTTCGGTGCTCTACGTATGTTTCGGGAGCCAGAAACTTATGAGCAAAGATCAAATGGAGGCTCTG GCAACCGGGTTGGAGAAGAGCAGGGTTCGATTCGTTTGGGTGGTAAAACCGGGCAGTGAGGAATCCGGGCAAGGAGTGGTACCGGATGGGTTTGAGGACC GGGTGTCTGGAAAAGGAATCGTGGTTAAGGGTTGGGTCGATCAGGTGACGATTCTGGGTCACCGGGCGGTCGGTGGGTTTCTTAGTCACTGCGGGTGGAA CTCGGTGCTGGAAGGAGTGGCGGCAGGCGTGACCATATTGGGTTGGCCAATGGAGGCTGACCAGTTTGTCAATGCTAGGCTGCTGGTGGAGGACTTGGGT GTAGCCGTGAGGGTCTGCGAGGGCGGTGACACGGTACCCGATCCTGTCGAGTTGGGTAACCGGATAGCAGAGTCGATGAGTAACGTTTTGGGTGAGAGGA AAGGAGCAGAGGAGCTAAAGAAGAAGGCATTGACTGCTATTGAAGAAGGCGGGAGCTCTCGGATTGACTTGGATAGGCTTGTTCATCAGTTGCATAAACT GCACAGTCAAAGCCAAAATGAGATTGAAGTCCAATCACATAATTAA
AA sequence Show only first row Show all	>Lus10036840 pacid=23171331 polypeptide=Lus10036840 locus=Lus10036840.g ID=Lus10036840.BGIv1.0 annot-version=v1.0 MAGNSVPPPPPSPLAHILVFPYPAQGHTLPLLDLIHHLLTLRRFSVTVVTTPKNLHSLSTLISLHHPLLRPLIFPFPHHHLLPAGVENVKDIGNSGNLPI VNALHKLSNPITVWFDSQPDPKPIALISDFFLGWTLSLSTRLGIPRFAFFSSGAFLASLTDKLFRDPVAMRNLDCIVFDELPGSPSFKAEHLPSMFRRYV PDDPDWELVREGVLSNLVSHGCIFNSFQALEGPSFDFLKGKMGHENVFAIGPVSMFGIDRNPNSSSSNVVEWLEHCQDGSVLYVCFGSQKLMSKDQMEAL ATGLEKSRVRFVWVVKPGSEESGQGVVPDGFEDRVSGKGIVVKGWVDQVTILGHRAVGGFLSHCGWNSVLEGVAAGVTILGWPMEADQFVNARLLVEDLG VAVRVCEGGDTVPDPVELGNRIAESMSNVLGERKGAEELKKKALTAIEEGGSSRIDLDRLVHQLHKLHSQSQNEIEVQSHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03490			UDP-Glycosyltransferase superf...		Lus10036840 [exp]	0	1
AT5G03490			UDP-Glycosyltransferase superf...		Lus10036837 [exp]	1.0	0.8887
AT3G51580			unknown protein		Lus10025224 [exp]	8.7	0.7330
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10021913 [exp]	10.4	0.7066
AT1G79010			Alpha-helical ferredoxin (.1)		Lus10040456 [exp]	21.1	0.6647
AT5G39570			unknown protein		Lus10029322 [exp]	22.4	0.6768
AT2G44600			unknown protein		Lus10043351 [exp]	26.8	0.6665
AT4G17080			Histone H3 K4-specific methylt...		Lus10028158 [exp]	37.8	0.6731
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10024466 [exp]	41.1	0.6592
AT5G35080			unknown protein		Lus10008819 [exp]	56.5	0.6660
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Lus10026667 [exp]	58.6	0.6553

Compare expression of checked genes

Lus10036840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.