Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30380 385 / 1e-132 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24760 361 / 2e-123 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 358 / 2e-122 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G01690 350 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 349 / 1e-118 alpha/beta-Hydrolases superfamily protein (.1) AT5G38220 315 / 7e-106 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT4G31020 311 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 305 / 2e-102 alpha/beta-Hydrolases superfamily protein (.1) AT1G66900 301 / 2e-101 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 279 / 2e-90 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019205 [exp] 425 / 2e-149 AT1G13610 258 / 2e-84 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035148 [exp] 400 / 3e-138 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 397 / 2e-137 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022307 [exp] 340 / 2e-114 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042075 [exp] 332 / 1e-111 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10033575 [exp] 326 / 1e-109 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10017617 [exp] 322 / 5e-108 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10040038 [exp] 320 / 6e-108 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018081 [exp] 333 / 7e-106 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136900 [exp] 449 / 6e-158 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 438 / 3e-153 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 387 / 4e-133 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 384 / 5e-132 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G340000 [exp] 373 / 7e-128 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 357 / 7e-122 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 357 / 1e-121 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G097300 [exp] 331 / 7e-112 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.017G117633 [exp] 325 / 1e-109 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G188100 [exp] 319 / 4e-108 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10036842 pacid=23171158 polypeptide=Lus10036842 locus=Lus10036842.g ID=Lus10036842.BGIv1.0 annot-version=v1.0 ATGGGGACGGCATCGTCTTCTATGGCGTCGAAGTTCGCCTACTACCCGCCCAACCCGCCGTCGTACACGGTGTCAGCCGACGAGGAGACGGGTAAGCTCC GGCTGGTTAGGGGCTACGACGACCACCGGCTGAGGGACGACGTGGACGTGGTAAAATTAGCGACGGGGAGAGGGAACGAGATAGTGGCCATGTTTGTGAA AAACCCGTCGGCGACTCTCACCGTGCTTTACTCCCACGGCAACGCCACTGATATCGGCCGGAGTTACTGTGTCTTCACAGAGCTTAGCTCTCATCTCAAC GTTAACCTCATGGGGTATGATTACTCGGGATATGGACAATCTTCGGGGAAGCCAAGTGAGCAGGACACATATGCAGACATCGAGGCAGCCTATAAATGCT TGAAAGACAAGTATGGAAAGAAGGAGGAAGACATAATACTCTATGGACAGTCACTTGGGAGTGGACCGACCCTTGAACTTGCTACCCATTTGCCCCAACT TAGGGCTGTTATCCTCCACTCTCCTATCCTCTCCGGCCTCCGGGTCATGTATCCCGTCAAGAAAACCTTCTTCTTTGACATATACAAGAACATTGACAAG ATCCCGTTGGTCAGATGCCCTGTTCTCGTAATGCATGGGACAGAAGATGATGTTGTAGATATCTCTCATGGGAAGAAGTTGTGGAATATGTGCAAGGAGA AGTACGAGCCATTGTGGGTTGAGAAAGGAAACCATTGTAACTTGGAGACATTCCCTCAGTACCTAACCCACCTAAGGAAGTTCGTCTCGGCTGTCGAGAA GGTCCCTCCCCACATTCGTACGCTCACTAGCGTTGCGGAGGAGGAGGCGGATGGCTGTGATAGTACTCCTCATCGTCTATCGGAACATCCATTGATCGTC CCTGTAGGAAGAAGTCATGATGTAAAGAGTTCAAATGGTACAGAGAGGTTTCCTGCAGGGAGGACGAGCGTGGATCACTGGGTCAACACTGTGAAGCACA AGGACAAGCTTTCACAGAGGAGGTTGAGTACAGGCGGCATCACAAACATTGCCGAGTTAAAAGATCACCATGAGTTGAACAACCATGTTAATAGGTCGTC GGCGAGAAAGAGCTTCGGGGAGATGGTGAGAACGGTGGGGTTGTGCAATGTGGAGTGTTTTAAACAGACGACTAGGCACACGGCCGAAGGATAA
AA sequence Show only first row Show all	>Lus10036842 pacid=23171158 polypeptide=Lus10036842 locus=Lus10036842.g ID=Lus10036842.BGIv1.0 annot-version=v1.0 MGTASSSMASKFAYYPPNPPSYTVSADEETGKLRLVRGYDDHRLRDDVDVVKLATGRGNEIVAMFVKNPSATLTVLYSHGNATDIGRSYCVFTELSSHLN VNLMGYDYSGYGQSSGKPSEQDTYADIEAAYKCLKDKYGKKEEDIILYGQSLGSGPTLELATHLPQLRAVILHSPILSGLRVMYPVKKTFFFDIYKNIDK IPLVRCPVLVMHGTEDDVVDISHGKKLWNMCKEKYEPLWVEKGNHCNLETFPQYLTHLRKFVSAVEKVPPHIRTLTSVAEEEADGCDSTPHRLSEHPLIV PVGRSHDVKSSNGTERFPAGRTSVDHWVNTVKHKDKLSQRRLSTGGITNIAELKDHHELNNHVNRSSARKSFGEMVRTVGLCNVECFKQTTRHTAEG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30380			alpha/beta-Hydrolases superfam...		Lus10036842 [exp]	0	1
AT5G39785			Protein of unknown function (D...		Lus10036751 [exp]	4.9	0.8969
AT2G33390			unknown protein		Lus10023738 [exp]	6.4	0.8513
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	10.3	0.9053
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036038 [exp]	15.5	0.8731
AT2G38820			Protein of unknown function (D...		Lus10018754 [exp]	15.6	0.8946
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	19.4	0.8957
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10015300 [exp]	23.4	0.8696
AT1G63300			Myosin heavy chain-related pro...		Lus10001482 [exp]	24.9	0.8713
AT1G07120			unknown protein		Lus10031863 [exp]	26.2	0.8831
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10010151 [exp]	28.3	0.8680

Compare expression of checked genes

Lus10036842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.