Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68990 1166 / 0 MGP3 male gametophyte defective 3 (.1.2) AT5G15700 1123 / 0 DNA/RNA polymerases superfamily protein (.1.2) AT2G24120 1034 / 0 PDE319, SCA3 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019208 [exp] 1464 / 0 AT1G68990 1245 / 0.0 male gametophyte defective 3 (.1.2) Lus10005097 [exp] 1138 / 0 AT5G15700 1289 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10031952 [exp] 1130 / 0 AT5G15700 1274 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10035150 [exp] 1130 / 0 AT5G15700 1273 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10034355 [exp] 1120 / 0 AT2G24120 1276 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10022181 [exp] 1000 / 0 AT2G24120 1300 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010771 [exp] 629 / 0 AT2G24120 814 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010770 [exp] 354 / 3e-114 AT2G24120 464 / 2e-157 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10019207 [exp] 245 / 3e-74 AT1G68990 73 / 1e-14 male gametophyte defective 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G112800 [exp] 1349 / 0 AT1G68990 1269 / 0.0 male gametophyte defective 3 (.1.2) Potri.010G136700 [exp] 1325 / 0 AT1G68990 1248 / 0.0 male gametophyte defective 3 (.1.2) Potri.017G105801 [exp] 1160 / 0 AT5G15700 1331 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.004G111600 [exp] 1150 / 0 AT5G15700 1326 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.018G103300 [exp] 1063 / 0 AT2G24120 1381 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Potri.006G181100 [exp] 1063 / 0 AT2G24120 1359 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00940 [flax] [poplar] RNA_pol DNA-dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Lus10036844 pacid=23171100 polypeptide=Lus10036844 locus=Lus10036844.g ID=Lus10036844.BGIv1.0 annot-version=v1.0 ATGTGGTGGACCTTCGCCAGACGAGTTTCCGCTGTCATGTGGAGGACCTTCGCCAGACGAGTTTCCGCTTCCAAGCGGCTCAAATTCCCCCCAAACAGCA CCACCAAGTCTACCGATTCCAACTTTCTCGAACGAATAAGACCTCCGGAGCTCTCTTCATCCGCCGGATTGCGCCGAGTTTGCTCCTCGTCCTCCGCCGT CGTTCAGAATTGGAAGCCGAGTTCCTTTGCAATCCCTAGCTCTGCTCATCGATTTTCGACTTCGGCTGCAGCTGCGCAGGTGGCTTCCACGACGGACGAG TCTGACCTCTCCGGGTCGGACAAGCTGCAGGATTTGGTGGAGCGATTCAACGGTAAGCACTTGCAGAAGGATCAGAATCAGGAGGAGGAGGAGAAGAAGA GAACGGAGTTCACAAAGAAAAAACGGGGACCGAAGCCGAATCAGATGGTGGCCGGGATGGGCATAGGTAAGTACGCGACGCTGAGGAAGAGGCAAGTGAA GATGGAGACCGAGGCGTGGGAGGAGGCGGCGAGGGAGTATCAGGAGCTGTTGACGGACATGTGCGAGCAGAAACTAGCTCCCAATTTGCCTTACGTGAAG ACTTTGTTCCTAGGGTGGTTTGAGCCCTTGAGGAATGCGATTCTGGCGGACCAGGATGCTTGCAAGCAGAAGAACAGTAAGGTTTCTCATGGGCCGTATT TCAATGAGCTGCCAGCTGATATGATGGCTGTTATAACCATGCATAAGTTGATGGCGCTGTTGCTGACTACTAATGGAGCGAATGGGAGAGTTACGGTGGT TCAGGCTTCCTGTGCTATTGGCGAAGCAATTGAGCATGAGGCGATGATTAACAAGTTCTTGGAGAAGACAAAGAAGAAGAGGAGCAGTAAGCCGGGCAAA CCGGAAGATGAGCCGGGTGTTGCTGCTATTGTGGAGGCGGAAACGGAGGAGAAACCAGTTGAAGACAGCGATAGACTGAGGAAAAAAGTAACTACAATGA TTAAAAAGCAGAAGGTTCATCAAGTGAGGAAAGTGGTGAAGGATCATGATGATTGGTCGCCATGGGGTCAGGATGCGCATGTTAAGGTTGGCTGTCGGGT GATACAATTGCTGATCGAAACAGCCCATATCCAACCCCCTGTTGATCAGTTAAGAGATGATCCAGCTGACATTCGACCGGCATTTGTGCACACCCGGACT GCCCCTGACGCTCAGAAAGCCAGTAGGAGATATGGAGTAATTGAGTGTGACCCTCTAGTTCTTAAGGGCCTTGAGAAATGGGCGAGGCATATGGTCATCC CTTACATGCCAATGTTGATTCCTCCACTGGACTGGATAGGATATGACAAAGGTGGACATTTCTTTTTGCCTTCTTATGTTATGAGAACCCATGGGTCGAA ACAACAACGGCAAGTGCTTAAGTGGACTTCAAAGGAACAATTGCGCCCTGTTTTTGAGGTTTGGGACTGCAATGCATATGCTCCAGCCCTTAATACATTA GGAAACACCAAGTGGAGAGTGAACAAAAGGGTACTAGCCGTAGTTGATAGAATATGGGCAAGTGGAGGCCATGTTGCTGGCTTGGTCAACCGTGAAGATA TACCTCTACCCGAGGAGATAGAAACAGAAGATGAGGCAGAAATGCGGAAGTGGAAGTGGAAAATGAATAGTATAAAAAAGGAGAACAGCGAGAGTCATTC ACAACGATGTTATATAGAACTTATACTTGCTTTGGCTCGTAAAATGAAGGACGAGGATGGCTTCTACTACCCTCACAACCTCGATTTCAGAGGACGTGCT TATCCCATGCACCCACATCTGAATCATTTTGGTTCTGATCTGTGCCGGGGTATATTGGAGTTCGCTGAGGGGAAGCCTCTTGGGAAGTCTGGCTTATGGT GGCTGAAGATACATTTGGCAAATGTCTATGCTGGCGGTGTTGACAAGTTATCATATGATGGGAGGATAGCATTTACTGAAAACCATCTAGGGGATATTTT TGACTCTGCTGAGCAACCTCTTGAAGGGAAGCAATGGTGGTTGGGAGCAGAGGATCCGTTCCAATGCTTAGCTACATGCATCAATCTCACAGAAGCATTG AGAAGTCCCTCCCCAGAGACCACCTTATCACACATGCCTGTCCACCAGGATGGCACGTGTAATGGCTTGCAACATTATGCTGCCCTTGGAAGGGACAAGT TAGGAGCAGCTGCAGTGAACCTAGTTCTTGGTGAAAAACCTGCAGATGTTTACTCAGGAATTGCTACTCGGGTTCTTGAAGTCATGCGAGCCGATGCAGA GAAAAATGCGACAAGGTATCCATATGCCAAGCTTCTGATTGATCAGGTTGACCGGAAATTAGTTAAACAGACGGTGATGACATCCGTATATGGCGTCACT TACATTGGTGCTTGCGACCAAATAAGAAAGAGGTTAAAAGAGCGTGGGGGAATAGAGGATGACATAGTTCTGTACCCCGCAGCTTCTTATGCAGCAAAAG TAGGGGCGACTACCTTGATTGCTATGGAGGAGATGTTTGAAGGGGCACGAAGTATCATGGCATGGCTTGGTGAATGTGCTAAGATAATCACCTCAGAGAA TCAGCCTGTGCAATGGGTCACCCCACTTGGACTCCCTGTCATACAGCCTTATCGACAACTGGGTAAGCATCTGATCAAGACATCCCTTCAGATGCTAACC CTACAGAGAGAAACTGGCAAAATAATGACCATGCGACAAAGAACTGCATTCCCACCGAATTTTGTTCACTCCCTTGATGGTTCTCACATGATGATGACTG CTGTTGCCTGCAGAAAGTCTGGTTTGAGCTTTGCAGGTGTCCACGATTCGTATTGGACTCATGCGTCCGATGTTGATGAAATGAACAGAATACTCAGAGA AAAGTTTGTCGAACTTTACGAGGCCCCTATCCTCGAGAATTTGTTGGTGAGCTTTCAGAAGTCATTCCCTAAATTGAAGTTTCCTCCACTGCCTGATAGA GGAGACTTCGATTTGAAAGATGTCTTAAGATCTCCCTATTTCTTCAATTAA
AA sequence Show only first row Show all	>Lus10036844 pacid=23171100 polypeptide=Lus10036844 locus=Lus10036844.g ID=Lus10036844.BGIv1.0 annot-version=v1.0 MWWTFARRVSAVMWRTFARRVSASKRLKFPPNSTTKSTDSNFLERIRPPELSSSAGLRRVCSSSSAVVQNWKPSSFAIPSSAHRFSTSAAAAQVASTTDE SDLSGSDKLQDLVERFNGKHLQKDQNQEEEEKKRTEFTKKKRGPKPNQMVAGMGIGKYATLRKRQVKMETEAWEEAAREYQELLTDMCEQKLAPNLPYVK TLFLGWFEPLRNAILADQDACKQKNSKVSHGPYFNELPADMMAVITMHKLMALLLTTNGANGRVTVVQASCAIGEAIEHEAMINKFLEKTKKKRSSKPGK PEDEPGVAAIVEAETEEKPVEDSDRLRKKVTTMIKKQKVHQVRKVVKDHDDWSPWGQDAHVKVGCRVIQLLIETAHIQPPVDQLRDDPADIRPAFVHTRT APDAQKASRRYGVIECDPLVLKGLEKWARHMVIPYMPMLIPPLDWIGYDKGGHFFLPSYVMRTHGSKQQRQVLKWTSKEQLRPVFEVWDCNAYAPALNTL GNTKWRVNKRVLAVVDRIWASGGHVAGLVNREDIPLPEEIETEDEAEMRKWKWKMNSIKKENSESHSQRCYIELILALARKMKDEDGFYYPHNLDFRGRA YPMHPHLNHFGSDLCRGILEFAEGKPLGKSGLWWLKIHLANVYAGGVDKLSYDGRIAFTENHLGDIFDSAEQPLEGKQWWLGAEDPFQCLATCINLTEAL RSPSPETTLSHMPVHQDGTCNGLQHYAALGRDKLGAAAVNLVLGEKPADVYSGIATRVLEVMRADAEKNATRYPYAKLLIDQVDRKLVKQTVMTSVYGVT YIGACDQIRKRLKERGGIEDDIVLYPAASYAAKVGATTLIAMEEMFEGARSIMAWLGECAKIITSENQPVQWVTPLGLPVIQPYRQLGKHLIKTSLQMLT LQRETGKIMTMRQRTAFPPNFVHSLDGSHMMMTAVACRKSGLSFAGVHDSYWTHASDVDEMNRILREKFVELYEAPILENLLVSFQKSFPKLKFPPLPDR GDFDLKDVLRSPYFFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10036844 [exp]	0	1
					Lus10003602 [exp]	1.0	0.8941
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10029574 [exp]	2.4	0.8816
AT5G43680			unknown protein		Lus10040152 [exp]	5.9	0.8440
AT1G67890			PAS domain-containing protein ...		Lus10016912 [exp]	7.7	0.8777
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	10.7	0.8395
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10021147 [exp]	10.8	0.7909
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10040530 [exp]	12.6	0.7835
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	13.6	0.8345
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	15.6	0.8450
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10017923 [exp]	17.2	0.8245

Compare expression of checked genes

Lus10036844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.