Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70560 415 / 4e-144 CKRC1, WEI8, TAA1, sav3 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) AT1G23320 404 / 8e-140 TAR1 tryptophan aminotransferase related 1 (.1) AT4G24670 391 / 5e-134 TAR2 tryptophan aminotransferase related 2 (.1.2) AT1G34040 268 / 1e-85 ATMEPCT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G34060 265 / 1e-84 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006199 [exp] 723 / 0 AT1G70560 405 / 6e-141 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10039944 [exp] 380 / 1e-129 AT4G24670 489 / 5e-172 tryptophan aminotransferase related 2 (.1.2) Lus10027678 [exp] 367 / 6e-126 AT4G24670 449 / 7e-158 tryptophan aminotransferase related 2 (.1.2) Lus10018088 [exp] 311 / 5e-99 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10028695 [exp] 246 / 4e-77 AT1G34060 474 / 4e-165 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10007085 [exp] 224 / 1e-68 AT1G34060 456 / 5e-158 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10042084 [exp] 162 / 1e-47 AT4G24670 190 / 5e-60 tryptophan aminotransferase related 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044500 [exp] 463 / 5e-163 AT1G70560 504 / 4e-179 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.008G187800 [exp] 461 / 3e-162 AT1G70560 477 / 1e-168 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.T125108 [exp] 416 / 1e-143 AT4G24670 487 / 7e-171 tryptophan aminotransferase related 2 (.1.2) Potri.012G083300 [exp] 413 / 3e-142 AT4G24670 489 / 1e-171 tryptophan aminotransferase related 2 (.1.2) Potri.002G063800 [exp] 274 / 3e-88 AT1G34060 472 / 1e-164 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G064000 [exp] 252 / 1e-79 AT1G34060 514 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF04864 [flax] [poplar] Alliinase_C Allinase
Representative CDS sequence Show only first row Show all	>Lus10036846 pacid=23171073 polypeptide=Lus10036846 locus=Lus10036846.g ID=Lus10036846.BGIv1.0 annot-version=v1.0 ATGGGAGTGCAAAAGACGGTCACAAATTCTAGCAGCGACAAGATTTTAACTACCGCGGCCCAGAAGTCTCCCGTCATTAATCTCGACCGCGGGGATCCGG CGGTGTTCGAGCCGTACTGGAGGAAGAATGGAGACAAGTGCACGATCACGATCGCCGGCCACGACTCGCTGAGCTACTTCTCCGACGTGACGAGCGTGTG CTGGTACATGGAGCCAAAGCTCCGGGACGCCATCCGGAGGCTCCACCAGGTCGTGGGAAATGCTGTTACTGATGATCGTCACTTGGTTGTCGGGACGGGG TCCACGCTCCTGTTTCAGGCGGCGCTTTACGCGCTCGCCGGCCCTGTTGTTGAAGCCGGTACTGCTAAGCCCGTGGACGTCGTTTGTGCAGCTCCTTACT ATTCGCAATACAAGGAGCAAGTTGAGATAGTACAATCGCGACTGTATGAGTGGGGAGGAGACGCCCGTACGTATAACAAGACCAAGGAACCATACATCGA GGTCGTTACCACCCCGAACAATCCTGACGGCAGTCTACGAGAGGCGGTGGTGGATCGCAAGGATGGGATGTTGATTCATGACTTGGCTTACTATTGGCCT AGCTACACGCCCGTCACTCGTGCTGCTGATCACGACATCATGCTCTTTACCCTCACCAAGTGTACCGGTCATGCTGGTTCACGGATCGGATGGGCGATAG TGAAGGACAAAGAGGTTGCAAGGAGGATGACGTTGTTCATGCAAATCTGCACGATAGGGGTATCGAAAGATTCTCAACTCCGTGCTGCGAAGATTTTAGA TGTGATTGCTGACGATTGTGAAAATCACGATTCGGACGAAACGTTCTTCGGGCAAAGCCGGAAGGTGATGGAAGAGAGATGGGAAAAGCTAAAGAAAGCC ATTAGGGTTCAAGATACATTCAGCTTGCCTAAGTACCCACAACAATATTGCAACTTCAGCGAGAAATTTTTCCATCCAGCTTCATCTTTCGGGTGGCTAA AGTGCAAAGACGGATGGGATGCATCCTCTTTGCTGAAAGAGCATAATGTGCTTACTAGAGGAGGAGAGGCATTTGGGGTGAGTAGCAAGTACACGAGGAT CAGCATGATCGGTACAGACGAAGATTTCGATCGATTTGCCGAGAGGGTTTCGAGGATTCAATATTCTGATGATCATGATGATGGAGCTTCGTTGTAA
AA sequence Show only first row Show all	>Lus10036846 pacid=23171073 polypeptide=Lus10036846 locus=Lus10036846.g ID=Lus10036846.BGIv1.0 annot-version=v1.0 MGVQKTVTNSSSDKILTTAAQKSPVINLDRGDPAVFEPYWRKNGDKCTITIAGHDSLSYFSDVTSVCWYMEPKLRDAIRRLHQVVGNAVTDDRHLVVGTG STLLFQAALYALAGPVVEAGTAKPVDVVCAAPYYSQYKEQVEIVQSRLYEWGGDARTYNKTKEPYIEVVTTPNNPDGSLREAVVDRKDGMLIHDLAYYWP SYTPVTRAADHDIMLFTLTKCTGHAGSRIGWAIVKDKEVARRMTLFMQICTIGVSKDSQLRAAKILDVIADDCENHDSDETFFGQSRKVMEERWEKLKKA IRVQDTFSLPKYPQQYCNFSEKFFHPASSFGWLKCKDGWDASSLLKEHNVLTRGGEAFGVSSKYTRISMIGTDEDFDRFAERVSRIQYSDDHDDGASL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10036846 [exp]	0	1
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10024854 [exp]	8.9	0.8849
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042378 [exp]	8.9	0.8834
AT4G29140		ADS1	ACTIVATED DISEASE SUSCEPTIBILI...		Lus10012944 [exp]	11.3	0.8799
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10027679 [exp]	14.0	0.8799
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10042647 [exp]	14.3	0.8779
					Lus10037775 [exp]	15.9	0.8719
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10000494 [exp]	19.8	0.8727
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10033651 [exp]	20.8	0.8738
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	20.9	0.8750
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10006451 [exp]	25.9	0.8716

Compare expression of checked genes

Lus10036846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.