Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21880 42 / 0.0002 LYM1 lysm domain GPI-anchored protein 1 precursor (.1.2) AT1G51940 41 / 0.0004 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT1G77630 40 / 0.0007 LYM3 lysin-motif \(LysM\) domain protein 3, Peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006200 [exp] 334 / 5e-118 AT1G21880 44 / 5e-05 lysm domain GPI-anchored protein 1 precursor (.1.2) Lus10004625 [exp] 181 / 3e-53 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10026689 [exp] 174 / 6e-51 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10027677 [exp] 81 / 2e-17 AT1G51940 320 / 7e-101 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 53 / 4e-08 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 51 / 2e-07 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 46 / 1e-05 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10026372 [exp] 42 / 0.0001 AT2G17120 249 / 3e-80 lysm domain GPI-anchored protein 2 precursor (.1) Lus10004504 [exp] 41 / 0.0004 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G081601 [exp] 166 / 3e-48 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 166 / 3e-48 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G187500 [exp] 142 / 3e-39 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 55 / 8e-09 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032300 [exp] 49 / 1e-06 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1) Potri.001G190200 [exp] 49 / 1e-06 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160501 [exp] 44 / 3e-05 AT2G23770 66 / 3e-12 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.002G084800 [exp] 44 / 4e-05 AT1G21880 554 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Potri.005G128200 [exp] 44 / 6e-05 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.010G078700 [exp] 42 / 0.0001 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10036847 pacid=23171175 polypeptide=Lus10036847 locus=Lus10036847.g ID=Lus10036847.BGIv1.0 annot-version=v1.0 ATGGCTTCACTTCAATTCCTTCTCATCCTCCTCACCTTCCTAACTCCCCTCTTCAACGCACAACAACCAACCATGTTCCCATTCCCATGCACCAAAAAAA TCATCAGCACATGCACATCAACCCTCTACCACGTCACCACCACAAACCCCACCACCACCCTCCAACAACTCGCCCACGATTACTCGGCCCAACCGTCCCA AATCAAACCCATAACCCACATCGAAAAGCAGGACTTCATCATCACAGTCCCTTGCTCCTGCCAGATTGCTGCCGACCAGACAACCGCCTACTTCTACAAC GTCGACTACACGGTCAAGCCTGGGGACACGTTCTTCAACGTGTCAACGAATGTCTACAGCGGGCAGGTGTGGGCCACGGGGGGCGAGCAGGATAGGTTCG TTGCCGGGAACAATGTGACCATGAACTTGTTGTGCGGGTGTCTAGGGAGCACGGGTGAGAACGTTGTGACGTATACTGTTCAGGATGGGGATACTTTGTT TGGGATTGCTAGCATGTTGGGGAGTGATTTGGGTGAGATTGAGAAGCTGAATAGCAAGTTGTTAGGGAATTCAAGTGGTGGGTTGATTGATGTGGGTTGG GTTCTTTATGTGCCGGTTGGAACTAATGGAACTTTGTTTGAGTAA
AA sequence Show only first row Show all	>Lus10036847 pacid=23171175 polypeptide=Lus10036847 locus=Lus10036847.g ID=Lus10036847.BGIv1.0 annot-version=v1.0 MASLQFLLILLTFLTPLFNAQQPTMFPFPCTKKIISTCTSTLYHVTTTNPTTTLQQLAHDYSAQPSQIKPITHIEKQDFIITVPCSCQIAADQTTAYFYN VDYTVKPGDTFFNVSTNVYSGQVWATGGEQDRFVAGNNVTMNLLCGCLGSTGENVVTYTVQDGDTLFGIASMLGSDLGEIEKLNSKLLGNSSGGLIDVGW VLYVPVGTNGTLFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51940			protein kinase family protein ...		Lus10036847 [exp]	0	1
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10016782 [exp]	4.2	0.5853
AT3G18180			Glycosyltransferase family 61 ...		Lus10032457 [exp]	11.5	0.5569
AT1G17800		AtENODL22	early nodulin-like protein 22 ...		Lus10020984 [exp]	19.2	0.5482
AT3G54200			Late embryogenesis abundant (L...		Lus10039665 [exp]	21.8	0.5226
AT1G11340			S-locus lectin protein kinase ...		Lus10005136 [exp]	26.1	0.5469
AT1G72940			Toll-Interleukin-Resistance (T...		Lus10009500 [exp]	40.6	0.5180
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001042 [exp]	41.6	0.5199
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10023434 [exp]	42.0	0.4737
					Lus10007176 [exp]	43.2	0.4738
					Lus10025316 [exp]	49.4	0.4706

Compare expression of checked genes

Lus10036847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.