Plant FIBer expression Database

Lus10036848 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G70570 869 / 0 anthranilate phosphoribosyltransferase, putative (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006201
[exp]
1128 / 0 AT1G70570 884 / 0.0 anthranilate phosphoribosyltransferase, putative (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G044900
[exp]
929 / 0 AT1G70570 903 / 0.0 anthranilate phosphoribosyltransferase, putative (.1.2)
PFAM info
Representative CDS sequence
>Lus10036848 pacid=23171231 polypeptide=Lus10036848 locus=Lus10036848.g ID=Lus10036848.BGIv1.0 annot-version=v1.0
ATGGAAGTACTGTTCAGTCCGCAACCTCCTTCACTCTCATTTCAGCGCGAGCAGCCTCGCCGCCTGAACCGCCTGACCGGACTCGGCTCGCTCAGATTAA
ATGGTGCTGGACGCCGTTGGATCGGACGATCGCGCTTGCAAACAGTGAAATCCGTTCTCGACTCGGCTACGCTGGATCAATTAGGAATATCTGAATCTGA
GATTAGGAATCCGACGGTTTCTTCCTCATATCGGAGCTCCAAGTTGCAGAAGCCGAACCAGACTGTTCTCGATGCTCAAGCTAGGGTTTGCACGGGTCCT
GAAATGACCAAGCCGCTTACCGAAGAGCAAGCATTCAAGGTCTTCGACACTATATTAAGATCAGCGAGGGGTGAGCTGAAAGATGAAGAAACAGTTTCCA
GAGCTCAGTTAGGAGCTCTCTTTGCTGGAATGACGATTCGTGCGAATGTATTTCCCGAAGCAACTCAATGGAGTGAAGGGGAGAGGCGTGCAGTTACTAG
ATTTTGGCCTGAGCTGGTTCGAGTTTTGCCGCCTGATGTGGTGTTCATTGCAGATCCCGAGGGTTCGATCATGAGCGTTGGGAATTCGATAGGGCCTCGG
TTTGTTGGAAATGATACTACTGAGATGCGATTGGTTGGTGCACTTAGGGAGGTGTTAGCTGGTGGCCATCTCGGATACGAGGAGGTCCAAGGTGTATTGA
GGGATGTTCTGCCATTAGATAACAATGAGAGCTCGAAAGAATCACTGGTTTCGGCGTTCTTGATTGGTCAGCGGATGAACAGAGAGACCGATCGCGAGTT
GAAAGCATACTGCCTTGCATTTGATAATGAACTTGGTCCTCCTCCAGTTGCTGATGTTAGATCTTTAACCCATTATGGTGAACCTTATGATGGAAACACA
CGTTTCTTTCGGAGTACATTGTTCGTTGCTGCTGTTAGATCGTGTTATGAAGAATCTTCGTTGCTTCATGGTGTGGACTGGATGCCACCCAAGGGAGGCA
TAACGGAAGAGCAAATGCTGAAGTTCATGGGTGCAAAGACGAATTTGACCCCGTTACAGGCGAAAGACCTTCTTGAGGATGAGGATCTTGGTTTTGCCTA
CGTAAGTCAGCGTGAGGCTCACCCATCCCTATATTCATTGATTAAGTTGAGGGAGCACATTAAGAAGCGTCCACCGCTGGCTACCACAGAGAAGGTTCAG
CAGTTAGTAAGGGCGAAGGGAAGGGAAGCAATTGTTGCTGGATTCTATCATGGCGGATACGAGGAGCCACTTTTGATGCTTATGAGAAGAAGAGGTGTCC
ATTCTGGTTTGGTTGTGAAGAAAGGAGCCCTGTCTATGACCACAAGATTGCGGTCAGGAAATACGTCGAAAGGACTTCCTGTGAACTACTGCTCAGGATT
CCGTTCGTCAAGTACAGCTTCTGCACTCGAAGTTGATGGCGTTTCTCGACAGAGCTTCAGCGTCGAGGTGAATGCGAAGGATTACGGGTTCGAGCCCACT
GATACACCTAGAACAGATAGATCGGTTTCCAAGAACATAGAGCTGGGTCTGGCGGCTCTTCATGGTGAGAAGGGACCAGCATACGATCGTATTGTATTGA
ACGCTGGAATGATTGACCACTTGCTGGGATGCAACGACTCGAACGACATATATTCGGCCCTGGATCGAGCTAGAGAGGCCATCGATAGCGGCCGAGCACT
AAAAAGGCTTTTAAGCTATATCAAGGCCACCAACAAAATGAAGTAA
AA sequence
>Lus10036848 pacid=23171231 polypeptide=Lus10036848 locus=Lus10036848.g ID=Lus10036848.BGIv1.0 annot-version=v1.0
MEVLFSPQPPSLSFQREQPRRLNRLTGLGSLRLNGAGRRWIGRSRLQTVKSVLDSATLDQLGISESEIRNPTVSSSYRSSKLQKPNQTVLDAQARVCTGP
EMTKPLTEEQAFKVFDTILRSARGELKDEETVSRAQLGALFAGMTIRANVFPEATQWSEGERRAVTRFWPELVRVLPPDVVFIADPEGSIMSVGNSIGPR
FVGNDTTEMRLVGALREVLAGGHLGYEEVQGVLRDVLPLDNNESSKESLVSAFLIGQRMNRETDRELKAYCLAFDNELGPPPVADVRSLTHYGEPYDGNT
RFFRSTLFVAAVRSCYEESSLLHGVDWMPPKGGITEEQMLKFMGAKTNLTPLQAKDLLEDEDLGFAYVSQREAHPSLYSLIKLREHIKKRPPLATTEKVQ
QLVRAKGREAIVAGFYHGGYEEPLLMLMRRRGVHSGLVVKKGALSMTTRLRSGNTSKGLPVNYCSGFRSSSTASALEVDGVSRQSFSVEVNAKDYGFEPT
DTPRTDRSVSKNIELGLAALHGEKGPAYDRIVLNAGMIDHLLGCNDSNDIYSALDRAREAIDSGRALKRLLSYIKATNKMK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G70570 anthranilate phosphoribosyltra... Lus10036848
[exp]
0 1
AT4G28610 GARP ATPHR1, PHR1 phosphate starvation response ... Lus10022885
[exp]
3.2 0.8563
AT5G13010 EMB3011 embryo defective 3011, RNA hel... Lus10000874
[exp]
8.7 0.8658
AT2G20780 AtPLT4 Major facilitator superfamily ... Lus10018581
[exp]
16.2 0.8633
AT5G27600 LACS7, ATLACS7 long-chain acyl-CoA synthetase... Lus10029918
[exp]
24.0 0.8654
AT5G04870 AK1, ATCPK1, CP... calcium dependent protein kina... Lus10008958
[exp]
26.0 0.8641
AT5G60550 ATSNAK1, GRIK2 geminivirus rep interacting ki... Lus10041298
[exp]
27.2 0.8501
AT3G08790 ENTH/VHS/GAT family protein (.... Lus10011689
[exp]
28.9 0.8561
AT3G14180 Trihelix ASIL2 Arabidopsis 6B-interacting pr... Lus10028984
[exp]
36.5 0.8402
AT1G73660 protein tyrosine kinase family... Lus10031341
[exp]
38.7 0.8208
AT1G24530 Transducin/WD40 repeat-like su... Lus10006460
[exp]
39.7 0.8461

Lus10036848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.