Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26590 659 / 0 MATE efflux family protein (.1) AT5G38030 649 / 0 MATE efflux family protein (.1) AT1G12950 644 / 0 RSH2 root hair specific 2 (.1) AT1G23300 625 / 0 MATE efflux family protein (.1) AT1G47530 516 / 0 MATE efflux family protein (.1) AT4G00350 493 / 5e-171 MATE efflux family protein (.1) AT4G25640 446 / 3e-153 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT3G21690 431 / 5e-147 MATE efflux family protein (.1) AT1G11670 428 / 4e-146 MATE efflux family protein (.1) AT1G61890 421 / 4e-143 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006205 [exp] 811 / 0 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036852 [exp] 726 / 0 AT1G23300 598 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 679 / 0 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 678 / 0 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 513 / 7e-180 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 496 / 3e-173 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10039263 [exp] 492 / 3e-171 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10027504 [exp] 489 / 3e-170 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10038850 [exp] 486 / 8e-169 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063500 [exp] 717 / 0 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 665 / 0 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.012G144900 [exp] 466 / 1e-160 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.015G147600 [exp] 459 / 4e-158 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.011G002800 [exp] 444 / 1e-152 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 441 / 4e-151 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 437 / 1e-149 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 437 / 2e-149 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 433 / 3e-148 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.002G161200 [exp] 426 / 2e-146 AT4G00350 657 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10036851 pacid=23171269 polypeptide=Lus10036851 locus=Lus10036851.g ID=Lus10036851.BGIv1.0 annot-version=v1.0 ATGGAGGATAACAATCAGCCGCTTCTACTTCATCCTCCTTCGGCGGCGGCAGAGGACACACACGAAGACAGAAACGTCGGGGACATTCCGCCGCTGCGAA CCCCCGGCGACTTCTGGAGGGTGTTTTATGCGGAGTTTGTCAAGCTTTGGTTCCTGGCAGGACCAGCAATCTTCACCACCGTGTGTTACTACTCCCTCGG AACCATAACTCAAATCTTCGCCGGCCACGTCGGCACTCTCGAGCTCGCCGCCTTCTCCGTTGAGAACTCTGTCATCGCTGGCTTCTCCTTTGGCACCATG CTAGGCATGGGAAGCGCACTGGAGACGCTATGCGGGCAAGCCTACGGGGCAGGACAGGTAGACATGCTAGGAGTGTACATGCAACGCTCCTGGGTCATCC TACTCACCACGTCAGCGCTTCTCAGCCTAATGTACATCTTCGCGGGCCCACTGCTCCTCCTCCTCGGCCAAACGCCGTCGATCTCACGCGCCGCTGGTCT ATTCTCAATATGGATGCTCCCCCAGCTCTTCGCCTACGCGGTCAGGTTCCCCATGGCCAAGTTCCTCCAGGCACAGAGCAAGATGATGGTGATGGCCGCG ATTGCGGCCACCGCGCTTGCCATCCACGCTATCTTCAGCTGGTTGCTCATACTGAAGCTCGGGTGGGGACTCGCCGGCGCCGCCGTGGTGCTCAACGCGT CGTGGTGGTTCATCGACGCGTTGCTGTTCGCGTACATCGCCGGCGGGAGCTGCGGCAGGGCTTGGAGTGGGTTCACGTGGATGGCGTTCCGGAATTTGTG GAGCTTTGTTCGGCTGTCACTTGCCTCTGCTGTTATGATATGCTTAGAGATTTGGTACTTCATGGTGTTGATACTATTTGCCGGCTACCTTAAGGATGCT GAGGTTGCTGTAGCTGCTTTGTCTATATGTATGAACATCTTGGGATGGACCATCATGGCGGCTTTTGGAATGAATGCAGCCATCAGTGTGAGAGTCTCCA ACGAATTGGGAGCAGGCCATCCAAGGACAGCGAAATTCGCACTTATGGTCGCTGTTATCTCGTCGTTCGTAGTGGGGTGTGTCCTTGCACTCGTGCTCCT CTTCACTAAGGACCACTACCCATCGATATTCTCGAACGATCCAGCGGTGAAAACCGTTGTTACGGAGATGACCCCGTTGATGGCTCTATGCATCGTCATT AACAATGTTCAACCCGTTCTCTCTGGTGTGGCTATTGGGGCTGGATGGCAAGCTGTTGTGGCCTATGTCAACATCGTTTGCTATTATGTGTTTGGGATAC CATTAGGCCTTATTTTAGGCTTCAAACTTGAAATGGGTGTCACAGGGATATGGTATGGGATGATGGGGGGAACAGTGGTGCAAACACTTGTGCTTTATTG GATGGTCTACAAAACCAACTGGAATAAGGAGGCTTCCATGGCCGAGGATCGGATCAAGAAATGGGGAGGAGACGACGCCGATTCAAGAGTACTGTCCGAA GATTAA
AA sequence Show only first row Show all	>Lus10036851 pacid=23171269 polypeptide=Lus10036851 locus=Lus10036851.g ID=Lus10036851.BGIv1.0 annot-version=v1.0 MEDNNQPLLLHPPSAAAEDTHEDRNVGDIPPLRTPGDFWRVFYAEFVKLWFLAGPAIFTTVCYYSLGTITQIFAGHVGTLELAAFSVENSVIAGFSFGTM LGMGSALETLCGQAYGAGQVDMLGVYMQRSWVILLTTSALLSLMYIFAGPLLLLLGQTPSISRAAGLFSIWMLPQLFAYAVRFPMAKFLQAQSKMMVMAA IAATALAIHAIFSWLLILKLGWGLAGAAVVLNASWWFIDALLFAYIAGGSCGRAWSGFTWMAFRNLWSFVRLSLASAVMICLEIWYFMVLILFAGYLKDA EVAVAALSICMNILGWTIMAAFGMNAAISVRVSNELGAGHPRTAKFALMVAVISSFVVGCVLALVLLFTKDHYPSIFSNDPAVKTVVTEMTPLMALCIVI NNVQPVLSGVAIGAGWQAVVAYVNIVCYYVFGIPLGLILGFKLEMGVTGIWYGMMGGTVVQTLVLYWMVYKTNWNKEASMAEDRIKKWGGDDADSRVLSE D

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26590			MATE efflux family protein (.1...		Lus10036851 [exp]	0	1
AT3G53400			unknown protein		Lus10019932 [exp]	1.4	0.9613
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Lus10037895 [exp]	2.4	0.9571
AT2G37130			Peroxidase superfamily protein...		Lus10015074 [exp]	3.9	0.9541
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034475 [exp]	4.7	0.9589
AT3G53400			unknown protein		Lus10026502 [exp]	6.3	0.9550
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029319 [exp]	6.7	0.9454
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	9.2	0.9531
					Lus10007012 [exp]	9.4	0.9187
AT2G20080			unknown protein		Lus10012982 [exp]	9.9	0.9352
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	10.2	0.9492

Compare expression of checked genes

Lus10036851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.