Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26590 568 / 0 MATE efflux family protein (.1) AT1G12950 556 / 0 RSH2 root hair specific 2 (.1) AT5G38030 555 / 0 MATE efflux family protein (.1) AT1G23300 543 / 0 MATE efflux family protein (.1) AT1G47530 436 / 2e-150 MATE efflux family protein (.1) AT4G00350 412 / 6e-140 MATE efflux family protein (.1) AT4G25640 373 / 1e-125 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT1G11670 349 / 5e-116 MATE efflux family protein (.1) AT3G21690 339 / 5e-112 MATE efflux family protein (.1) AT1G61890 335 / 1e-110 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006205 [exp] 752 / 0 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 691 / 0 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 595 / 0 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 594 / 0 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 424 / 3e-145 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10039263 [exp] 418 / 7e-143 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10027504 [exp] 412 / 7e-141 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10010035 [exp] 411 / 1e-140 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10038850 [exp] 405 / 5e-138 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063500 [exp] 609 / 0 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 566 / 0 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.012G144900 [exp] 384 / 2e-129 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.015G147600 [exp] 380 / 6e-128 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.011G002600 [exp] 366 / 2e-122 AT3G21690 610 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 363 / 3e-121 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 358 / 2e-119 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 353 / 1e-117 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.002G161200 [exp] 350 / 2e-117 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 352 / 4e-117 AT3G21690 646 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10036852 pacid=23171153 polypeptide=Lus10036852 locus=Lus10036852.g ID=Lus10036852.BGIv1.0 annot-version=v1.0 ATGGAGGATTACAAGCAGCCGCTTCTACTTCCTCCTCAGGCAGCGGCGGAGGACAAACACAACGGCGGCCGAGATGATGGAGACATTCCTCCGATCAGCA CCCTCGGAGACTTCTGCCGGGAGTTTTATGCAGAGTCGATCAAGCTTTGGTTCCTGGCGGGACCCGCAATCTTCACGTCCATATGTCAGTACTCCCTCGG CGCCGTAACTCAAATCGCCGCCGGCCAGGTCGGCACTCTGGAGCTCGCCGCCGTCTCCGTCGAGAACTCTGTCATCGCCGGCTTCTCCTTTGGCACCATG CTAGGCATGGGAAGCGCACTGGAGACGCTATGTGGGCAAGCCTACGGGGCAGGACAGCTAGACATGTTAGGAGTCTACATGCAACGCTCATGGGTCATCC TACTCGCCACGTCAGCGCTACTCAGCCTAATGTACATCTTCGCGGGCCCACTGCTCCTTCTCCTCGGCCAAGCCCCGTCGATCTCACGCGCCGCGGGTGT CTTCTCCATATGGATGATCCCTCAGCTATTCGCCTACGCGCTCAACTTCCCGATGGCCAAGTTCCTCCAGGCGCAGAGCAAGATGATGGTGATGGCCGGG ATCGCCGCGGCCGCGCTTGCCCTCCACGCGCTCTTCAGCTGGCTGCTCATACTCAAGCTCGGGTGGGGGCTGGCCGGCGCCGCCGTGGTGCTGAACGCGT CATGCTTGGAGATATGGTACTTCATGGTGTTGATACTCTTTGCTGGCTACCTTAAAGATGCTGAAGTTTCTGTAGCTGCTTTGTCTATATGCATGAACAT TTTGGGATGGACTATCATGGCAGCTTTCGGAATGAATGCAGCCATTAGTGTGAGAATCTCTAATGAATTGGGAGCAGGCCATCCAAGGACAGCGAAATTC GCGCTCATGGTCGCGGTTATATCCTCGTTCATAGTGGGGTTCGCCCTCGCGCTCGTGCTCGTCGTCGCTAAGGACTACTACCCGTCGCTGTTCTCGAACG ATCCAGTAGTGAAACTCGTTGTCGCGGAGATGACCCCACTCCTGGCTCTGTGCATCGTCATTAACAATGTTCAACCCGTTCTCTCCGGTGTGGCAATTGG GGCTGGATGGCAAGCTGCTGTCGCCTACGTAAACATAGTTTGCTATTATGTGTTTGGGATACCATTGGGCCTCATTCTGGGCTACAAACTTGAAATGGGT GTCACGGGGATTTGGTATGGGATGATGGGGGGAACAGTGGTGCAGACGCTTGTGCTTTATTGGATGATCTACAAAACCAACTGGAATAAGGAGGCTTCGA TGGCCAGAGATCGATTGAAGAAATGGGGAGGAGACGAAGATTCAAAAGATTCGCGTAATTAA
AA sequence Show only first row Show all	>Lus10036852 pacid=23171153 polypeptide=Lus10036852 locus=Lus10036852.g ID=Lus10036852.BGIv1.0 annot-version=v1.0 MEDYKQPLLLPPQAAAEDKHNGGRDDGDIPPISTLGDFCREFYAESIKLWFLAGPAIFTSICQYSLGAVTQIAAGQVGTLELAAVSVENSVIAGFSFGTM LGMGSALETLCGQAYGAGQLDMLGVYMQRSWVILLATSALLSLMYIFAGPLLLLLGQAPSISRAAGVFSIWMIPQLFAYALNFPMAKFLQAQSKMMVMAG IAAAALALHALFSWLLILKLGWGLAGAAVVLNASCLEIWYFMVLILFAGYLKDAEVSVAALSICMNILGWTIMAAFGMNAAISVRISNELGAGHPRTAKF ALMVAVISSFIVGFALALVLVVAKDYYPSLFSNDPVVKLVVAEMTPLLALCIVINNVQPVLSGVAIGAGWQAAVAYVNIVCYYVFGIPLGLILGYKLEMG VTGIWYGMMGGTVVQTLVLYWMIYKTNWNKEASMARDRLKKWGGDEDSKDSRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23300			MATE efflux family protein (.1...		Lus10036852 [exp]	0	1
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10025464 [exp]	4.9	0.6640
AT4G12290			Copper amine oxidase family pr...		Lus10024571 [exp]	11.1	0.5277
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001437 [exp]	15.4	0.5908
AT1G79760		DTA4	downstream target of AGL15-4 (...		Lus10025825 [exp]	17.8	0.6384
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10006952 [exp]	19.4	0.6130
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034701 [exp]	27.4	0.5793
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10027946 [exp]	28.7	0.5618
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10005614 [exp]	43.1	0.5656
AT1G08350			Endomembrane protein 70 protei...		Lus10004873 [exp]	50.5	0.5706
AT5G46150			LEM3 (ligand-effect modulator ...		Lus10038516 [exp]	104.2	0.5022

Compare expression of checked genes

Lus10036852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.