Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26590 110 / 6e-29 MATE efflux family protein (.1) AT1G12950 108 / 3e-28 RSH2 root hair specific 2 (.1) AT5G38030 107 / 7e-28 MATE efflux family protein (.1) AT1G23300 103 / 2e-26 MATE efflux family protein (.1) AT1G47530 84 / 2e-19 MATE efflux family protein (.1) AT5G65380 67 / 1e-13 MATE efflux family protein (.1) AT5G10420 67 / 2e-13 MATE efflux family protein (.1) AT4G25640 62 / 1e-11 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT5G44050 59 / 1e-10 MATE efflux family protein (.1) AT4G00350 58 / 3e-10 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036854 [exp] 136 / 4e-38 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 130 / 8e-36 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10036852 [exp] 117 / 2e-31 AT1G23300 598 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 117 / 5e-31 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 98 / 3e-24 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10002367 [exp] 81 / 1e-19 AT1G47530 191 / 1e-59 MATE efflux family protein (.1) Lus10002366 [exp] 81 / 2e-19 AT1G47530 192 / 2e-59 MATE efflux family protein (.1) Lus10010035 [exp] 81 / 4e-18 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 81 / 5e-18 AT1G47530 704 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G187100 [exp] 121 / 8e-33 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 121 / 1e-32 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.002G132300 [exp] 77 / 3e-18 AT1G47530 196 / 4e-61 MATE efflux family protein (.1) Potri.007G010200 [exp] 68 / 1e-13 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 63 / 3e-12 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 56 / 1e-09 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.012G144900 [exp] 53 / 1e-08 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.011G002600 [exp] 53 / 1e-08 AT3G21690 610 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 51 / 5e-08 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.011G002500 [exp] 50 / 1e-07 AT3G21690 613 / 0.0 MATE efflux family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036853 pacid=23171353 polypeptide=Lus10036853 locus=Lus10036853.g ID=Lus10036853.BGIv1.0 annot-version=v1.0 ATGGAGGACTACTCAAAGCAGCAGCAGCTTCTCCCTACCCACCATGAACAACAACAGCAAGTACCAGACTACAACCCACAATCAGTACTGGTACCAGTAC CAGTACCATTAAGTAGTACTAATTCTGCATCATCTATCCATTCAATAGTAGCATCATCAACTAATTCCTTCACAGCAGATGCAGAGGACATCCAGCCAAT TACAACCCTCAAGGGTTTCACAAGGGAGTTCTTGACCGAGTCTAGTAAGCTGTGGTGGCTTGCCGGCCCGGCTGTGTTCACCACTCTGTTTCAGTACTCA CTTGGTGCTGTGACTCAGATGCTTGCTGGCCAGGTTGGTACTTTGGAGCTTGCTGCTGTCTCTGTCGAGAACAATGTCATTGCTGGCTTCTCCTTTGGTG TCATGGCTGAATCGGGCGACATGGCCGAATCAAACCGAAACCTTGGTTATAGAAAGATGGCAGAAATGGAGGGGGAGGGCACGTGA
AA sequence Show only first row Show all	>Lus10036853 pacid=23171353 polypeptide=Lus10036853 locus=Lus10036853.g ID=Lus10036853.BGIv1.0 annot-version=v1.0 MEDYSKQQQLLPTHHEQQQQVPDYNPQSVLVPVPVPLSSTNSASSIHSIVASSTNSFTADAEDIQPITTLKGFTREFLTESSKLWWLAGPAVFTTLFQYS LGAVTQMLAGQVGTLELAAVSVENNVIAGFSFGVMAESGDMAESNRNLGYRKMAEMEGEGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12950		RSH2	root hair specific 2 (.1)		Lus10036853 [exp]	0	1
AT5G36000			unknown protein		Lus10012627 [exp]	1.4	0.8470
AT3G15570			Phototropic-responsive NPH3 fa...		Lus10030390 [exp]	2.0	0.8585
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10031127 [exp]	4.2	0.8466
AT5G18910			Protein kinase superfamily pro...		Lus10034000 [exp]	6.3	0.7910
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007139 [exp]	11.0	0.8453
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10018047 [exp]	12.0	0.8162
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009621 [exp]	12.2	0.8146
AT2G46150			Late embryogenesis abundant (L...		Lus10027177 [exp]	15.7	0.8116
					Lus10040159 [exp]	16.5	0.8078
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10012854 [exp]	16.7	0.8116

Compare expression of checked genes

Lus10036853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.