Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26590 666 / 0 MATE efflux family protein (.1) AT5G38030 660 / 0 MATE efflux family protein (.1) AT1G12950 652 / 0 RSH2 root hair specific 2 (.1) AT1G23300 639 / 0 MATE efflux family protein (.1) AT1G47530 558 / 0 MATE efflux family protein (.1) AT4G00350 493 / 6e-171 MATE efflux family protein (.1) AT4G25640 461 / 4e-159 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT3G21690 444 / 5e-152 MATE efflux family protein (.1) AT1G11670 443 / 1e-151 MATE efflux family protein (.1) AT1G61890 432 / 1e-147 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006206 [exp] 973 / 0 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 697 / 0 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 670 / 0 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10036852 [exp] 598 / 0 AT1G23300 598 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 536 / 0 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 519 / 0 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10026323 [exp] 507 / 6e-177 AT1G47530 525 / 0.0 MATE efflux family protein (.1) Lus10042344 [exp] 502 / 6e-175 AT1G47530 521 / 0.0 MATE efflux family protein (.1) Lus10039263 [exp] 497 / 4e-173 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063500 [exp] 748 / 0 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 725 / 0 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.015G147600 [exp] 476 / 1e-164 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.012G144900 [exp] 474 / 1e-163 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.011G002800 [exp] 469 / 4e-162 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 457 / 3e-157 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 453 / 8e-156 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 452 / 2e-155 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 452 / 2e-155 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.014G153100 [exp] 449 / 5e-154 AT3G21690 704 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10036854 pacid=23171056 polypeptide=Lus10036854 locus=Lus10036854.g ID=Lus10036854.BGIv1.0 annot-version=v1.0 ATGGAAGAACCAAAGCTGCTGCAGCAGCCTCTTCTTCCACCCAACCATCAAGAACCAGATGATCAAGACTCACAAGTAGAAGTACTACTAACTCCATCTC TCCATTCAATAGCAGCAGCTGATGCAGAGGATATCCAACCAATCGTTAGCCTTCAAGATTTCTCCACAGAGTTCTGGGCCGAGTCTAAGAAGCTCTGGTG GCTTGCTGGGCCGGCTGTGTTCACTACTCTGTGCCAGTACTCACTTGGAGCCGTCACTCAAGTGCTTGCTGGCCAGGTTGGCACCTTGGAGCTCGCTGCT GTCTCTGTGGAGAACAATGTTATTGCTGGCTTCTCCTTTGGTGTCATGCTCGGGATGGGGAGCGCGCTCGAAACACTATGCGGGCAGGCCTACGGAGCGA AACAGCTAGACATGCTAGGAATCTACATGCAAAGGTCATGGGTGATCCTAACATCAACGGCTATAATCCTCAGCTTCCTCTACATCTTCGCGGGTCCGTT TCTCGAACTAATCGGGCAGAAACCCGAGATAGCGAGAGCTGCAGGGACATTCTCAATATGGATGATCCCTCAGCTGTTCGCATATGCGGCCAACTTCCCG ATCGCCAAGTTCCTACAGGCTCAGAGCAAGATCATGGCCATGGCCTTGATCTCGACCGTGGCCCTAGTCCTCCACACCTTTTTCAGCTGGCTCCTGATGC TGAAGTTAGGGTGGGGGATGGTGGGGGCCGCGGTGGTCCTCAACAGTTCGTGGTGGTTCATCGTGTTGGGTCAACTTTTGTACATTTTTAGCGGGACTTG CGGCCAGGCTTGGTCCGGGTTCTCGTGGAGGGCGTTCCAGAATCTGTGGGGGTTCGTCCGGCTGTCCCTTGCTTCTGCTGTTATGCTTTGTTTGGAAATA TGGTATTTCATGGCTTTGATCATTTTTGCTGGATATCTGAAGAATGCAGAGGTCTCTGTTGATGCATTGTCTATAAGCATGAACATAATGGGGTGGACAG TCATGGTGGCACTTGGAATCAATGCAGCAATCAGCGTACGAGTGTCGAACGAGCTTGGAGCAGCACACCCGAGAACGGCCAAGTTCTCAGTCGCGGTTGC AGTGATATCCTCCTTCCTGATCGGTCTTGTGATTGCCTCCATCCTCCTCACAGCACAAAAAGGCTACCCGTCTTGGTTCTCTAACGATTTCGACGTCAGG GCACTGGTGGAAGCGCTTACCCCGTTGCTTGCTCTCTCCATCGTCATTAACAATGTCCAACCCGTCCTCTCCGGTGTAGCGATTGGAGCGGGATGGCAAG CTGCAGTAGCTTACGTGAACATTGCTTGCTACTATGCATTCGGGATACCTATCGGTCTGGTTTTCGGTTACATGCTTCACCTCGGAGTCAGGGGAATATG GTATGGAATGCTAGCAGGGACGATCCTGCAGACCCTGGTTCTGTTCGGGATGGTTTACAGAACCAACTGGAACAAAGAGGCTTCGGCTGCAGAAGAGAGG ATAAGGAAGTGGGGAGGAGATGACGGATCCAAAGAGATTGATGCTTAA
AA sequence Show only first row Show all	>Lus10036854 pacid=23171056 polypeptide=Lus10036854 locus=Lus10036854.g ID=Lus10036854.BGIv1.0 annot-version=v1.0 MEEPKLLQQPLLPPNHQEPDDQDSQVEVLLTPSLHSIAAADAEDIQPIVSLQDFSTEFWAESKKLWWLAGPAVFTTLCQYSLGAVTQVLAGQVGTLELAA VSVENNVIAGFSFGVMLGMGSALETLCGQAYGAKQLDMLGIYMQRSWVILTSTAIILSFLYIFAGPFLELIGQKPEIARAAGTFSIWMIPQLFAYAANFP IAKFLQAQSKIMAMALISTVALVLHTFFSWLLMLKLGWGMVGAAVVLNSSWWFIVLGQLLYIFSGTCGQAWSGFSWRAFQNLWGFVRLSLASAVMLCLEI WYFMALIIFAGYLKNAEVSVDALSISMNIMGWTVMVALGINAAISVRVSNELGAAHPRTAKFSVAVAVISSFLIGLVIASILLTAQKGYPSWFSNDFDVR ALVEALTPLLALSIVINNVQPVLSGVAIGAGWQAAVAYVNIACYYAFGIPIGLVFGYMLHLGVRGIWYGMLAGTILQTLVLFGMVYRTNWNKEASAAEER IRKWGGDDGSKEIDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26590			MATE efflux family protein (.1...		Lus10036854 [exp]	0	1
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	2.0	0.9489
AT3G49950	GRAS		GRAS family transcription fact...		Lus10011076 [exp]	3.5	0.9370
AT4G30000			Dihydropterin pyrophosphokinas...		Lus10036922 [exp]	3.7	0.9204
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	5.1	0.9460
AT5G48940			Leucine-rich repeat transmembr...		Lus10023677 [exp]	8.0	0.9234
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	8.1	0.9307
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10029406 [exp]	10.1	0.9282
					Lus10002087 [exp]	10.2	0.9279
AT3G55230			Disease resistance-responsive ...		Lus10030318 [exp]	10.2	0.9332
AT4G22990			Major Facilitator Superfamily ...		Lus10015852 [exp]	15.9	0.9045

Compare expression of checked genes

Lus10036854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.