Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26580 344 / 3e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006208 [exp] 472 / 1e-168 AT3G26580 283 / 7e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090000 [exp] 347 / 6e-117 AT3G26580 323 / 2e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036856 pacid=23171147 polypeptide=Lus10036856 locus=Lus10036856.g ID=Lus10036856.BGIv1.0 annot-version=v1.0 ATGGCGGTGGTGGGGAACTTGGCGCTTCTACTCGACGGAACGATGCCTCCGGCGATATTTCTCCCGGAGCGGAAAACTCGACCGGTGGCTCTGGATTTCC TGCTGAGCTTGTCGAAGCGGGAGCTTCATCATCTCACGACTTCGCACAACGTCTATACTTCTCCTCTCGCGGCAAAGAGCTTCAAATCAGAAGGAGAGAG GAAAAATCTGAGAGGAGGTCGGAGGAAACTGAATTCGAAGGTGAACGGCGTTGATTTCGACAGCGACGAGGAGTACGGAAACCAAAACGGCGTGGGAGAA GAAGAAGAGGAGGAGATTCCGTACGATTGGGAGGATGCCATAAAGAAGCAAATGGAGGAGATTCAAGAGATGAAGGATTTGGAGAAGAAGGCGGAGGAGT TGCAGGACAAGGCGGATGAAGATGAGAGCAACCAAGAAGGGAAAGAAGAAGAGACTGAAGAGGAGAAGAGGCAGAGAGTTAGAAAAGAGCTTGAAAAGGT TGCCCGGGAGCAGGCGGAGAGGAGACAAACGGCTCAATTGATGTTCGATTTAGGACAAAGAGCTTACGGCAGAGGCATGTATGGAAGATCTGTTGAGTTT CTTGAAGCTGCTCTGACTATAATCCCAAGGCCTACCTTATTTGGTGGTGAGATTCAGATATGGTTGGCAATGGCTTACGATGCGAATAACAGGCGCGCAG ATTGCCTTACTCTCTACAGGCAATTGGAGGAGACGCATCCTAGTATTGGCATTCGTCGCCAAGCTGCCGAACTTCGATATATCTCGCAAGCACCGAAGCT CAAGATAACCCAAGAAGAAATGGTTACAATCCCACTCATTGGTTCTGCTTATGACAGTTACGTTGCTGTTGTTGTGATCGGCGTTGTTGATGATCACTGC AGCTATGCATCGTCGTGGACCGATAAGTACAAGGACAAGGACGAGAAGCAAAACTGGACGACAACCAACCAGCTTCCATCGTCGCGAGACTACTTGGGAG ATCTCCTGCAATGGCGACCCCCGACTGGACTGGAGAACAACCAAGGCTTCTGGGTGGCGCTCACGTTTTGGCTAGGCTTGGTTGGAGCTGCACTTTTCCT GCAAAACTGA
AA sequence Show only first row Show all	>Lus10036856 pacid=23171147 polypeptide=Lus10036856 locus=Lus10036856.g ID=Lus10036856.BGIv1.0 annot-version=v1.0 MAVVGNLALLLDGTMPPAIFLPERKTRPVALDFLLSLSKRELHHLTTSHNVYTSPLAAKSFKSEGERKNLRGGRRKLNSKVNGVDFDSDEEYGNQNGVGE EEEEEIPYDWEDAIKKQMEEIQEMKDLEKKAEELQDKADEDESNQEGKEEETEEEKRQRVRKELEKVAREQAERRQTAQLMFDLGQRAYGRGMYGRSVEF LEAALTIIPRPTLFGGEIQIWLAMAYDANNRRADCLTLYRQLEETHPSIGIRRQAAELRYISQAPKLKITQEEMVTIPLIGSAYDSYVAVVVIGVVDDHC SYASSWTDKYKDKDEKQNWTTTNQLPSSRDYLGDLLQWRPPTGLENNQGFWVALTFWLGLVGAALFLQN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26580			Tetratricopeptide repeat (TPR)...		Lus10036856 [exp]	0	1
AT3G26580			Tetratricopeptide repeat (TPR)...		Lus10006208 [exp]	1.0	0.8920
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Lus10038147 [exp]	5.2	0.8759
AT5G27560			Domain of unknown function (DU...		Lus10029929 [exp]	13.7	0.8582
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10001560 [exp]	13.9	0.8611
AT2G04700			ferredoxin thioredoxin reducta...		Lus10039449 [exp]	15.7	0.8816
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10023517 [exp]	16.5	0.8159
AT2G24060			Translation initiation factor ...		Lus10036595 [exp]	19.2	0.8293
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10031051 [exp]	19.5	0.8339
AT3G56010			unknown protein		Lus10040939 [exp]	20.4	0.8339
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10015442 [exp]	20.5	0.8492

Compare expression of checked genes

Lus10036856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.