Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70610 919 / 0 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT5G39040 281 / 1e-84 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT1G27940 257 / 3e-72 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 253 / 6e-71 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT1G02530 251 / 2e-70 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT1G02520 250 / 6e-70 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT3G62150 248 / 3e-69 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT3G28390 248 / 3e-69 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT4G25450 236 / 6e-69 ABCB28, ATNAP8 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) AT5G46540 243 / 1e-67 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006209 [exp] 1255 / 0 AT1G70610 939 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10022270 [exp] 627 / 0 AT1G70610 738 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10007987 [exp] 313 / 2e-96 AT5G39040 875 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10021145 [exp] 307 / 3e-94 AT5G39040 868 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10004519 [exp] 243 / 6e-72 AT1G02520 636 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010068 [exp] 254 / 3e-71 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010012 [exp] 254 / 3e-71 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010067 [exp] 251 / 2e-70 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10038050 [exp] 250 / 5e-70 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G045900 [exp] 934 / 0 AT1G70610 1033 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Potri.015G059800 [exp] 313 / 9e-97 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 310 / 2e-95 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059700 [exp] 306 / 8e-94 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.017G097200 [exp] 284 / 2e-85 AT5G39040 892 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.002G187400 [exp] 266 / 2e-75 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113000 [exp] 254 / 2e-71 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187500 [exp] 250 / 7e-70 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 246 / 8e-69 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G003000 [exp] 246 / 2e-68 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10036857 pacid=23171227 polypeptide=Lus10036857 locus=Lus10036857.g ID=Lus10036857.BGIv1.0 annot-version=v1.0 ATGGCGCTTCTTCAGCTTTCCATTACAGCGCCACGTCTCCTCCCTTCGCGCCACCGTCTCCGGGTCAGCAGCGCGGTTGACCGACGGAGTGTCCGTCTAT CTAGAGATACGAAGTACGGTTTCTCTAACCTGTCATTCAAGGCTTGCGATAAGTTTGTTGCTACTCGCTTTGCGCCACTGGTGAGATGTGCTTCCGTGAA CGGATACACGGTAGAGAACGGAGGAGCGGGGAAGGTAATCGACGGAGGAGGAGAGGAAGCGGACGGAAATGACGAGCTACACCAGCGGATTCGGGGATTC ATTGAGTTCCTGCCATCGATTTTACCTGGCGGAAACTGGTGGAGCTTATCAGATGACGTGGATGTCAAGCTCGTAGCGGAGCCGGTAACTGTTTGGCGAG CGTTGGGGAGGATGTGGCAGCTTGTGGCTCGGGATCGTTGGATCATATTCGCCGCATTCTCCGCCCTAATTTTAGCTGCGGTATCAGAGATCTCGATACC GCATTACTTGACGGCGTCGATTTTCACGGCACAGAGTGCTGACGTTTCCACATTTCACCGGAACGTCCGGCTGCTAGTTTTGCTCTGCGTTACTTCTGGA ATATGCAGAGATGCTGAATTCATTGTTTTTGTCTGTTTGAAGTTCAGTGGCTTAAGAGGTTGCTGCTTTGGCATTGCTAATATGATCCTTGATATTTCGT TTTTCGATGATGAAACAGTTGGTGATTTGACAAGTAGGCTTGGGTCTGACTGCCAACAAGTGTCCCGTGTTATTGGGAATGATCTTAACCTTATCTTGAG GAATGTTGTGCAGGGAACAGGTGCATTGACCTACTTGTTGATCCTTTCGAAGCCGCTTGGTCTATGTACCCTATTCATATGCTCAGTTTTGGCAGCTGTG ATGACGATTTACGGCATGTATGATCTTTTAATTTTGTTTCTCAGTAGTCTTGTTGGGAGTATGAGTTTGTTCGAGCCTTGGTATCAGAAGAAAGCTGCAA GGCTGACCCAAGAGTTCACGGCTTCTGCTAATGATGTGGCTCAGGAGACACTTTCTTTGATTAGGACAGTCCGTGTTTATGGAACTGAGAAATTAGAACG TCAAAGGTATAATTTATGGCTCGACAGACTGGCTGATATAAGTTTGAAGCAAAGTGCTGCATATGGAATATGGAATTTGAGCTTCAATACACTTTATCAC TCTACCCAGGTCATTGCTGTGTTATTAGGAGGAATGTCTATTCTTGCTGGTCAAATTACAGCAGAGCACCTCACAAAGTTCATACTATACAGCGAATGGC TGATCTTTTCTACTTGGTGGGTGGGAGACAATTTATCATCTCTCATGCAGTCTGTTGGTGCTAGCGAGAAGGTCTTCAAAATGATGGATCTCTTGCCAAG TGATCAATTGCTGGAACTCGCTCAGACTGGTGTTAAAGGCTGTCTTCATGCCTTGCAATGCAAGTTTGGGTTGCAAAGCAGCCTTGAACATTGCCTTATT TTGGCAAGACTCATGAGATTGCAGTTACAGAAGATTAAGGGAAGCATTGACTTCCAAAACATATCTTTCCATTATCCTTCTAGAGAATCAGTGCAAGTAC TCCAACATGTAAATATTACTGTTCATCCCGGTGAAGTTATTGCAATTGTCGGTCTTAGTGGTAGTGGGAAAAGCACTTTGGTGAATCTCTTACTCCGCCT ATACAAGCCAACAAGCGGCCAGATTCTAATCGATGGCACTCCACTACAAGATCTGGATATCAAATGGTTCAGGGAAAGAATCGGGTATGTCGGGCAGGAG CCTAAGCTCTTCCGGACGACCCTGAGTTCGAACATAAGTTATGGATGCCCACAAGACGTAACTCAGGAGGAAATAGAGCATGCAGCTAAGGAAGCATTCG CTCACGACTTCATCACTTCCCTACCCGATGGCTACAAAACGATCGTCGATGATGACCTGCTGAGCGGAGGCCAGAAGCAGAGAATCGCCATTGCTCGAGC TATTCTCAGGGACCCCTCGATCTTGATCCTTGACGAAGCCACCAGTGCACTCGATGCAGAGAGTGAGCACAACGTGAAGGGTGTTATCCGTTCCCTTAGA AGCGACTCGATGTCGAGGAGAACGGTCATTGTGATCGCCCACCGGCTATCTACCATACAAGCTGCCGATAGGATTGTTGTGATGGGTAACGGTGAAGTGC TCGAGATGGGGAGACACAAGGAGTTGCTCCTTAAAGATGGCCTCTATGCTCAATTAACCAGGAGACAAGCTGACGCTGTTGCGTAA
AA sequence Show only first row Show all	>Lus10036857 pacid=23171227 polypeptide=Lus10036857 locus=Lus10036857.g ID=Lus10036857.BGIv1.0 annot-version=v1.0 MALLQLSITAPRLLPSRHRLRVSSAVDRRSVRLSRDTKYGFSNLSFKACDKFVATRFAPLVRCASVNGYTVENGGAGKVIDGGGEEADGNDELHQRIRGF IEFLPSILPGGNWWSLSDDVDVKLVAEPVTVWRALGRMWQLVARDRWIIFAAFSALILAAVSEISIPHYLTASIFTAQSADVSTFHRNVRLLVLLCVTSG ICRDAEFIVFVCLKFSGLRGCCFGIANMILDISFFDDETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVVQGTGALTYLLILSKPLGLCTLFICSVLAAV MTIYGMYDLLILFLSSLVGSMSLFEPWYQKKAARLTQEFTASANDVAQETLSLIRTVRVYGTEKLERQRYNLWLDRLADISLKQSAAYGIWNLSFNTLYH STQVIAVLLGGMSILAGQITAEHLTKFILYSEWLIFSTWWVGDNLSSLMQSVGASEKVFKMMDLLPSDQLLELAQTGVKGCLHALQCKFGLQSSLEHCLI LARLMRLQLQKIKGSIDFQNISFHYPSRESVQVLQHVNITVHPGEVIAIVGLSGSGKSTLVNLLLRLYKPTSGQILIDGTPLQDLDIKWFRERIGYVGQE PKLFRTTLSSNISYGCPQDVTQEEIEHAAKEAFAHDFITSLPDGYKTIVDDDLLSGGQKQRIAIARAILRDPSILILDEATSALDAESEHNVKGVIRSLR SDSMSRRTVIVIAHRLSTIQAADRIVVMGNGEVLEMGRHKELLLKDGLYAQLTRRQADAVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10036857 [exp]	0	1
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	2.2	0.8120
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Lus10011398 [exp]	3.0	0.7676
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	4.9	0.7695
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10006209 [exp]	5.3	0.7703
AT5G24650			Mitochondrial import inner mem...		Lus10015593 [exp]	5.3	0.7856
AT2G40570			initiator tRNA phosphoribosyl ...		Lus10012958 [exp]	7.7	0.7184
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10019075 [exp]	9.3	0.7191
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	9.9	0.7532
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014039 [exp]	11.4	0.8067
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10028677 [exp]	11.7	0.7131

Compare expression of checked genes

Lus10036857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.