Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26570 726 / 0 ORF02, PHT2;1 phosphate transporter 2;1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006210 [exp] 1023 / 0 AT3G26570 777 / 0.0 phosphate transporter 2;1 (.1.2) Lus10029257 [exp] 47 / 4e-05 AT3G26570 56 / 5e-08 phosphate transporter 2;1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G046300 [exp] 816 / 0 AT3G26570 697 / 0.0 phosphate transporter 2;1 (.1.2) Potri.008G186601 [exp] 803 / 0 AT3G26570 672 / 0.0 phosphate transporter 2;1 (.1.2) Potri.004G061400 [exp] 61 / 2e-09 AT3G26570 67 / 2e-11 phosphate transporter 2;1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01384 [flax] [poplar] PHO4 Phosphate transporter family
Representative CDS sequence Show only first row Show all	>Lus10036858 pacid=23171344 polypeptide=Lus10036858 locus=Lus10036858.g ID=Lus10036858.BGIv1.0 annot-version=v1.0 ATGGCAGCTTCTTTTTACTGCATGCCCTCCACAAGGAACACTGTGACTCCCAACACTGTTCTTTTCAATCATCTCATCCACGGCCGCCGTTGCTGCAATT CCCAGCTCAAACCAGAGGCAACATCTCTTATAAAGTCCAAGCCTTTTCAGTTCCTCCCAATCTTCAGGCTGAAAAGCTCAAAACTTTCCCATCCTTTTGC TAGCATCTCTTCCTTTGAAGAAGGAGGCAAAGACGAAGTTGTAGAAACTAAGGGGGAATCAGAAGATAATGAGTTGCCAGGGATGGCTCAAGCTTTCCAC ATATCTTCGAGGACAGCCTTTGGTATCTCTATATTCATGGCCTTTGCTGCTTTGAGCCTGCCTTTGTTCATGAAGTCTTTAGGGCAAGGTCTGAGCTTGA AGACCAAGTTCTTGTCTTATGTGACTTTGCTGTTTGGGTTCTACATGGCTTGGAACATTGGTGCTAATGATGTGGCTAATGCCATGGGGACCTCTGTGGG TTCTGGTGCTCTCAGTTTGAGGCAGGCTGTTCTTACTGCTGCTGTTTTGGAGTTCTCTGGTGCTTTCTTGATGGGGACTCATGTTACTAGTACAATGCAG AAAGGGATCCTTGTTGCTAATGTGTTTCAAGGGAAGGATACTCTTCTCTTTGCTGGCTTGCTCTCTTCTTTGGCTGCTGCTGGTACTTGGTTGCAGGTGG CATCCTACTATGGCTGGCCAGTTTCAACAACACACTGCATTGTGGGAGCAATGGTCGGATTCGGTCTGGTCTACGGAGGATCTGGGGCCGTCTTTTGGAG CTCACTTGCTAGGGTGACTTCATCATGGGTCATCTCCCCATTTATTGGAGCATTGGTTTCCTTCCTTGTCTACAAATGCATCCGCAGGTTTGTGTATTCT GCTCCGAATCCAGGCCAAGCAGCGGCCACAGCAGCACCAATAGCAGTCTTCCTAGGCGTCTCTGGCATCTCATTCGCAGCATTTCCACTAAGCAAAACAC TCACCATTGCCATCCTACAAGCATTAGCCATTGGATCCACCGGTGCATTCATTGTCTCGAAAATCATCCACAAACAACTCGGCCATCTCCTAACCAAAGC CGCATCATCACAATCCGATTCGAAAGAAGGTCCCTCCTCACCGGTTGGATTCCTTTCCGACATCGCTGGTCCCACAGGGACACAGCTCGAAATCGTGTAC GGTGTCTTCGGTTACATGCAGATCCTCTCTGCATGCTTCATGTCGTTTGCTCACGGGGGGAACGATGTTTCAAACGCCATTGGCCCTCTGGCGGCTGCTT TATCGATCCTACACGGAGGAGCGAGCGGAGCTGAGATCGTTATCCCGATGGATGTTCTGGCATGGGGAGGATTCGGTATAGTTGCGGGGCTAATGATGTG GGGATATAGAGTGATTGCAACTATTGGGAAGAAGATCACGGAACTCACACCGACTAGAGGGTTTGCAGCCGAGTTTGCAGCAGCTTCTGTGGTACTTGGG GCATCGAAGCTTGGTTTACCCATTTCGGCTACTCATACTCTCGTTGGGGCAGTGATGGGAGTCGGTTTCGCTAGAGGGTTGAATAGTGTCAGAGCTGAAA CTGTTAGGGAGATTGTAACTTCATGGATAGTCACTATCCCTGCTGGAGCCATGTTTGCTGTTCTCTACACATGGATCTTCACCAGGCTTTTGGCTTCGAT ACTGTGA
AA sequence Show only first row Show all	>Lus10036858 pacid=23171344 polypeptide=Lus10036858 locus=Lus10036858.g ID=Lus10036858.BGIv1.0 annot-version=v1.0 MAASFYCMPSTRNTVTPNTVLFNHLIHGRRCCNSQLKPEATSLIKSKPFQFLPIFRLKSSKLSHPFASISSFEEGGKDEVVETKGESEDNELPGMAQAFH ISSRTAFGISIFMAFAALSLPLFMKSLGQGLSLKTKFLSYVTLLFGFYMAWNIGANDVANAMGTSVGSGALSLRQAVLTAAVLEFSGAFLMGTHVTSTMQ KGILVANVFQGKDTLLFAGLLSSLAAAGTWLQVASYYGWPVSTTHCIVGAMVGFGLVYGGSGAVFWSSLARVTSSWVISPFIGALVSFLVYKCIRRFVYS APNPGQAAATAAPIAVFLGVSGISFAAFPLSKTLTIAILQALAIGSTGAFIVSKIIHKQLGHLLTKAASSQSDSKEGPSSPVGFLSDIAGPTGTQLEIVY GVFGYMQILSACFMSFAHGGNDVSNAIGPLAAALSILHGGASGAEIVIPMDVLAWGGFGIVAGLMMWGYRVIATIGKKITELTPTRGFAAEFAAASVVLG ASKLGLPISATHTLVGAVMGVGFARGLNSVRAETVREIVTSWIVTIPAGAMFAVLYTWIFTRLLASIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Lus10036858 [exp]	0	1
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Lus10006210 [exp]	1.0	0.9693
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10018770 [exp]	4.9	0.8792
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10009126 [exp]	8.4	0.8727
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10005947 [exp]	8.5	0.8917
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10002789 [exp]	9.8	0.8615
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10028517 [exp]	12.2	0.8781
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018435 [exp]	12.5	0.8719
AT5G16030			unknown protein		Lus10017573 [exp]	13.9	0.8441
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	15.0	0.8829
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Lus10012363 [exp]	15.4	0.8224

Compare expression of checked genes

Lus10036858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.