Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06980 41 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006211 [exp] 335 / 5e-119 AT1G06980 39 / 9e-04 unknown protein Lus10000440 [exp] 72 / 8e-15 AT1G70620 192 / 2e-50 cyclin-related (.1.2.3) Lus10026092 [exp] 68 / 4e-14 ND 42 / 5e-05 Lus10002327 [exp] 67 / 5e-14 AT1G29195 47 / 1e-06 unknown protein Lus10026699 [exp] 70 / 6e-14 AT1G70620 213 / 4e-57 cyclin-related (.1.2.3) Lus10020386 [exp] 47 / 3e-06 AT1G06980 44 / 3e-05 unknown protein Lus10009561 [exp] 46 / 3e-06 AT1G06980 44 / 1e-05 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G186700 [exp] 193 / 8e-63 AT5G50090 41 / 1e-04 unknown protein Potri.010G046225 [exp] 192 / 2e-62 ND / Potri.002G217100 [exp] 81 / 2e-18 ND / Potri.003G179600 [exp] 62 / 5e-12 ND / Potri.014G170000 [exp] 59 / 6e-11 ND / Potri.011G066500 [exp] 39 / 0.0006 AT1G29195 170 / 6e-54 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036859 pacid=23171086 polypeptide=Lus10036859 locus=Lus10036859.g ID=Lus10036859.BGIv1.0 annot-version=v1.0 ATGCTGACTGGTTGCTACTGTTTCTTGTCGAGCCGTCAGATGAAATCCAGAAGAAAGCATGAATCCAATGTCAGGATAGTTCATCCTGGTGGAAGACAGG AGCTTTACGAATTGGCTATTCCTGCACGGAAAATCATGCAGAAGTATCCGGGGACTTGTGTCGCTAAGCCGGGAGTTTTTAGAAGCCCTGAAGGGTGCCT TCTGGGGCCGGAAGAGAAGCTGATGCCTGGTAACAAGTACCTTGTGATTCCATCAACCACTGCTGAGAAACTGAAGCACAGACATTCTCATTCTCAGAGA GAAAAGTCGAAAGAGGAGGATGCAATTGATGATGATATGTCGGATGTGAGCATAACTTGGGACGAACATGACATTTCTGAGGAATCTGTATGTTCTGCAA AAGATTTCTATGCTTCCCAGGACAGGTTGTCGAGGCGTTCAGAGAGGAAGAAGAACAACATCAGGTCTCGACAGCCTTTTGTACCTCCACTTCCAACGAT ACGAGGTCTGAAGGGTTTAAGCTGGGAGCCTAGCCTTACCTCTGTGCAGGAACTATCTCCATGA
AA sequence Show only first row Show all	>Lus10036859 pacid=23171086 polypeptide=Lus10036859 locus=Lus10036859.g ID=Lus10036859.BGIv1.0 annot-version=v1.0 MLTGCYCFLSSRQMKSRRKHESNVRIVHPGGRQELYELAIPARKIMQKYPGTCVAKPGVFRSPEGCLLGPEEKLMPGNKYLVIPSTTAEKLKHRHSHSQR EKSKEEDAIDDDMSDVSITWDEHDISEESVCSAKDFYASQDRLSRRSERKKNNIRSRQPFVPPLPTIRGLKGLSWEPSLTSVQELSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06980			unknown protein		Lus10036859 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10024886 [exp]	7.2	0.8283
AT1G03590			Protein phosphatase 2C family ...		Lus10031631 [exp]	13.4	0.8069
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	17.7	0.8253
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010374 [exp]	18.0	0.8250
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10021994 [exp]	18.5	0.7985
AT1G16670			Protein kinase superfamily pro...		Lus10028149 [exp]	19.2	0.8166
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	24.2	0.8009
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10042533 [exp]	24.2	0.7942
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10021012 [exp]	26.7	0.8033
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	27.9	0.7787

Compare expression of checked genes

Lus10036859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.