Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70630 449 / 8e-157 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G35610 76 / 5e-15 XEG113 xyloglucanase 113 (.1) AT1G56550 66 / 6e-12 RXGT1 RhamnoGalacturonan specific Xylosyltransferase 1 (.1) AT1G19360 62 / 1e-10 RRA3 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75120 59 / 2e-09 RRA1 REDUCED RESIDUAL ARABINOSE 1, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75110 59 / 2e-09 RRA2 REDUCED RESIDUAL ARABINOSE 2, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28695 56 / 9e-09 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G01750 55 / 2e-08 RGXT2 rhamnogalacturonan xylosyltransferase 2 (.1) AT4G01220 55 / 2e-08 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) AT4G01770 54 / 7e-08 RGXT1 rhamnogalacturonan xylosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006212 [exp] 569 / 0 AT1G70630 610 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10005034 [exp] 76 / 5e-15 AT2G35610 886 / 0.0 xyloglucanase 113 (.1) Lus10027804 [exp] 74 / 2e-14 AT2G35610 927 / 0.0 xyloglucanase 113 (.1) Lus10026327 [exp] 69 / 6e-13 AT1G19360 610 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10032710 [exp] 65 / 1e-11 AT1G19360 629 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10018812 [exp] 65 / 1e-11 AT1G19360 636 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10042340 [exp] 63 / 5e-11 AT1G19360 603 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 59 / 9e-10 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 59 / 9e-10 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G186800 [exp] 455 / 1e-157 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G046100 [exp] 347 / 4e-116 AT1G70630 497 / 5e-171 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.004G235800 [exp] 71 / 2e-13 AT2G35610 976 / 0.0 xyloglucanase 113 (.1) Potri.009G113300 [exp] 69 / 4e-13 AT1G19360 655 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G042700 [exp] 69 / 7e-13 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G051600 [exp] 68 / 1e-12 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G139800 [exp] 67 / 2e-12 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G134400 [exp] 64 / 2e-11 AT1G19360 622 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G166000 [exp] 60 / 6e-10 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.014G092400 [exp] 54 / 3e-08 AT4G01220 530 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10036860 pacid=23171327 polypeptide=Lus10036860 locus=Lus10036860.g ID=Lus10036860.BGIv1.0 annot-version=v1.0 ATGTCGGGTTGCTCAGTTAGTAATATTGAGTTGGGGAACTTGCAGCCATTGCTTGAGTTCCAAGCTTCCCTGGAATCGTTGCTTGAGATAACTGCGGACA AGACTCGGACAGTTGTGCTTGCTGTTGCTGGATATAGTTACAAGGACATGTTGATGAGTTGGGTTTGCAGATTGCGCCGTTTGAAAGTTACCAACTTTAT CATTTGTGCTCTGGACCATGAAACCTTTGAATTTTCTTTTCTTCAGGGTTTGCCAGTTTTCTATGATCCATCAGCAGCACCAAGGAACATCAGCTTCAAC GATTGCCATTTCGGAACGAAATGCTTCCAGAGAGTAACAAAGGTTAAATCCAGGTTAGTTCTCAAGATATTGAAGCTAGGATACAATGTACTCCTCAGTG ACGTAGATGTCAACTGGTTTCGAAATCCACTGCAGTTCCTCACCTCATTCGGTCCCGGGTTTCTCGTTGCTCAGGCCGATGAATACAACAAAACAGGTCC AATAAACTTACCAAGGCGCCTGAACTCTGGCTTTTACTTTGCTCGTTCAGATGCTCCAACTATCACCGTCATCGATAAGGTAGTGATCCATGCTGCTAAT TCAGGTCTTTCAGAGCAGCCAAGCTTTTACGACGTAATGTGTGGTGAAGGTGGATCGAATCGAATCAGTGATAACCGATGCCTAGATCCGGAAACGAATC TGACTGTTCATTTCTTGGATAGAGACCTTTTCCCCAACGGTGCATACTTCGACCTGTGGGATGAGCCGAACGTAACAGCATCTTGTATGAAGAGAAGTTG CTTTGTTCTTCACAATAACTGTTTGAATGGAAGATTGAAGAAGCTCGAACGCCAGGTTTCGTCCGGTCTGTGGGAGTATGACGGTAGCAAAGAATGTGTC TTTCCTGCATAA
AA sequence Show only first row Show all	>Lus10036860 pacid=23171327 polypeptide=Lus10036860 locus=Lus10036860.g ID=Lus10036860.BGIv1.0 annot-version=v1.0 MSGCSVSNIELGNLQPLLEFQASLESLLEITADKTRTVVLAVAGYSYKDMLMSWVCRLRRLKVTNFIICALDHETFEFSFLQGLPVFYDPSAAPRNISFN DCHFGTKCFQRVTKVKSRLVLKILKLGYNVLLSDVDVNWFRNPLQFLTSFGPGFLVAQADEYNKTGPINLPRRLNSGFYFARSDAPTITVIDKVVIHAAN SGLSEQPSFYDVMCGEGGSNRISDNRCLDPETNLTVHFLDRDLFPNGAYFDLWDEPNVTASCMKRSCFVLHNNCLNGRLKKLERQVSSGLWEYDGSKECV FPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70630			Nucleotide-diphospho-sugar tra...		Lus10036860 [exp]	0	1
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Lus10009032 [exp]	4.4	0.8320
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	11.7	0.8291
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Lus10016199 [exp]	18.3	0.7800
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10014502 [exp]	20.4	0.7824
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002545 [exp]	24.2	0.8159
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10007675 [exp]	27.9	0.7498
AT5G35170			adenylate kinase family protei...		Lus10019071 [exp]	31.3	0.7553
AT4G18380			F-box family protein (.1.2)		Lus10013431 [exp]	32.0	0.7902
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10019407 [exp]	37.1	0.7947
AT5G06270			unknown protein		Lus10029413 [exp]	38.1	0.7930

Compare expression of checked genes

Lus10036860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.