Plant FIBer expression Database

Lus10036861 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G70630 91 / 2e-21 Nucleotide-diphospho-sugar transferase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006212
[exp]
218 / 1e-67 AT1G70630 610 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G046100
[exp]
119 / 3e-31 AT1G70630 497 / 5e-171 Nucleotide-diphospho-sugar transferase family protein (.1)
Potri.008G186800
[exp]
104 / 5e-26 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info
Representative CDS sequence
>Lus10036861 pacid=23171253 polypeptide=Lus10036861 locus=Lus10036861.g ID=Lus10036861.BGIv1.0 annot-version=v1.0
ATGTCACGCCATCTTTTCCTCAGTCTTCCTTCTTCTCGACACTTGAATCTTCGCCTGGATATTCGGGGTTTATATTTCCGTCAAGATTTCCTTTATCGAA
TCAAATCACTGTGGTTCTCTTCTGCCAGCACCACCACCCTTCTGTTGTTGATTTCGCTTCCGGGTTTGAGAAATCAAAGGGTTTTGGTTGACTACACCGT
TGATTTCACGTTTCTTGGGACTCCATTCTTCCATTCCATGGTGGAGAGATCACAAGCATTTGCCACTGACATTGTTTTGCAGGAGATGATACATGGCTGG
AATAAGTCGAATCCTTGCAAAGATGCAAGTATGATCATGGCTTGGAATAGTGGCAGCATGCCTTTACATAACGGGGTGCTTCCCCCTTTCTTATTTGGTA
AAGGGATTCACAACCACTGGCTTGTTAATGAGGCTATTGCATCCGAATTGAGGGTTGTGTTTGATGCAAGCTCGACCATCTCGGGGGCCTTTCTGAACGA
GCCAGAAGACATGGGGGATACTAGAAGCTGGGAGGCAGTTGGAAACTCACATCTTGGTTCTTCATACGGGTCATTGCTCTTTTCATGA
AA sequence
>Lus10036861 pacid=23171253 polypeptide=Lus10036861 locus=Lus10036861.g ID=Lus10036861.BGIv1.0 annot-version=v1.0
MSRHLFLSLPSSRHLNLRLDIRGLYFRQDFLYRIKSLWFSSASTTTLLLLISLPGLRNQRVLVDYTVDFTFLGTPFFHSMVERSQAFATDIVLQEMIHGW
NKSNPCKDASMIMAWNSGSMPLHNGVLPPFLFGKGIHNHWLVNEAIASELRVVFDASSTISGAFLNEPEDMGDTRSWEAVGNSHLGSSYGSLLFS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G70630 Nucleotide-diphospho-sugar tra... Lus10036861
[exp]
0 1
AT3G59140 ATMRP14, ABCC10 ATP-binding cassette C10, mult... Lus10017548
[exp]
41.2 0.6311
Lus10012234
[exp]
43.1 0.5867
AT4G37850 bHLH bHLH025 basic helix-loop-helix (bHLH) ... Lus10012457
[exp]
49.8 0.6280
AT1G56280 ATDI19 drought-induced 19 (.1.2) Lus10041945
[exp]
108.3 0.5781
AT1G27070 5'-AMP-activated protein kinas... Lus10030802
[exp]
154.3 0.5733
AT1G19110 inter-alpha-trypsin inhibitor ... Lus10039919
[exp]
190.8 0.5433
AT3G57630 exostosin family protein (.1.2... Lus10026311
[exp]
221.5 0.5368
AT2G25660 EMB2410 embryo defective 2410 (.1) Lus10012414
[exp]
231.7 0.5456

Lus10036861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.