Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26510 122 / 3e-35 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT1G70640 110 / 5e-31 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) AT3G48240 101 / 3e-27 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G49920 92 / 1e-22 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G57610 93 / 3e-22 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G63130 86 / 3e-21 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G79570 87 / 3e-20 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 87 / 6e-20 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G01190 86 / 1e-19 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT1G16270 85 / 2e-19 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006214 [exp] 312 / 3e-110 AT3G26510 123 / 1e-35 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10026700 [exp] 130 / 3e-38 AT3G26510 135 / 3e-40 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10043341 [exp] 109 / 5e-30 AT3G48240 145 / 2e-44 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10019490 [exp] 108 / 1e-29 AT3G48240 149 / 9e-46 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 92 / 5e-23 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10040006 [exp] 93 / 4e-22 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 93 / 4e-22 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001314 [exp] 92 / 6e-22 AT5G57610 393 / 1e-125 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10002588 [exp] 92 / 9e-22 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G046400 [exp] 146 / 4e-44 AT3G26510 152 / 5e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.008G186500 [exp] 142 / 1e-42 AT3G26510 152 / 1e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.012G085000 [exp] 102 / 2e-27 AT5G63130 139 / 4e-42 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.015G083400 [exp] 100 / 1e-26 AT3G48240 152 / 2e-47 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 89 / 4e-21 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.006G170700 [exp] 89 / 7e-21 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G006200 [exp] 87 / 8e-21 AT5G49920 188 / 3e-58 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G224500 [exp] 87 / 2e-20 AT5G49920 185 / 3e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 87 / 2e-20 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.006G190200 [exp] 86 / 8e-20 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10036862 pacid=23171103 polypeptide=Lus10036862 locus=Lus10036862.g ID=Lus10036862.BGIv1.0 annot-version=v1.0 ATGGCAACTACTACTTCGCCGGACTCAGCCACCATCAAGTTCCAGTGCAGCCACGGCGGCAAGCTCGTCCCCCGCCCCCTCGACGGCAAGCTCCGCTACC ACGGTGGTGAAACCCGAGTCCTCACTGTCAGCCGATCGATTTCCTACTCCGAATTATTAATCAAGTTAGGACGGGTGAACTATGAGGACAGTAAGGTGAT GCGTTTGCGTTGTCAATTGCCGGAGGTTGATCTTGACGACGCACTGGTGAACATAGTCTCCGACGAGGATTTGACTAGTCTCATTGAGGAATACGATCGA GTTGCTACTCCTGCAACCTCGTCTTTGAAAATTAGGGCCTTCCTTTCGTCCCCGACAAAAATATCTGCCGATGATCTATCATCTACTTCATCTTCCTCAT CCTCCTCGTCGTCCTCCTCGTCACATACTTTTGATGCAAGGTTATGTTCCCCGAAATGTTTCAACCGTCGAGTTTCTAAGACGACAATAGTGGCTTCGCC GGCGAGGAAGGTCCCCCGATATGGTTACGTCTACGATAGAGATCATTGGCAATGA
AA sequence Show only first row Show all	>Lus10036862 pacid=23171103 polypeptide=Lus10036862 locus=Lus10036862.g ID=Lus10036862.BGIv1.0 annot-version=v1.0 MATTTSPDSATIKFQCSHGGKLVPRPLDGKLRYHGGETRVLTVSRSISYSELLIKLGRVNYEDSKVMRLRCQLPEVDLDDALVNIVSDEDLTSLIEEYDR VATPATSSLKIRAFLSSPTKISADDLSSTSSSSSSSSSSSSHTFDARLCSPKCFNRRVSKTTIVASPARKVPRYGYVYDRDHWQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10036862 [exp]	0	1
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10017882 [exp]	1.4	0.9019
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10018087 [exp]	2.8	0.8749
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10006214 [exp]	3.3	0.9240
AT1G70820			phosphoglucomutase, putative /...		Lus10020414 [exp]	3.5	0.8826
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Lus10004076 [exp]	5.2	0.8641
AT1G70820			phosphoglucomutase, putative /...		Lus10015835 [exp]	6.3	0.8880
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10023230 [exp]	6.6	0.8466
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10010605 [exp]	7.5	0.8394
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10007651 [exp]	11.5	0.8264
AT2G23110			Late embryogenesis abundant pr...		Lus10042745 [exp]	11.8	0.8797

Compare expression of checked genes

Lus10036862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.