Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56720 547 / 0 Protein kinase superfamily protein (.1.2.3) AT5G18500 491 / 2e-171 Protein kinase superfamily protein (.1.2) AT1G09440 490 / 3e-171 Protein kinase superfamily protein (.1) AT3G59110 474 / 2e-164 Protein kinase superfamily protein (.1) AT2G42960 469 / 2e-162 Protein kinase superfamily protein (.1) AT3G17420 438 / 5e-151 GPK1 glyoxysomal protein kinase 1 (.1) AT1G01540 379 / 2e-127 Protein kinase superfamily protein (.1.2) AT4G01330 371 / 2e-124 Protein kinase superfamily protein (.1.2) AT4G02630 361 / 2e-120 Protein kinase superfamily protein (.1) AT4G34500 352 / 2e-117 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006215 [exp] 661 / 0 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001423 [exp] 517 / 0 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10001055 [exp] 515 / 1e-178 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10020747 [exp] 483 / 6e-168 AT3G59110 737 / 0.0 Protein kinase superfamily protein (.1) Lus10029788 [exp] 479 / 1e-166 AT3G59110 734 / 0.0 Protein kinase superfamily protein (.1) Lus10018722 [exp] 369 / 6e-123 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10036386 [exp] 367 / 9e-123 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 366 / 2e-122 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024813 [exp] 367 / 3e-122 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G003300 [exp] 644 / 0 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 629 / 0 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G001600 [exp] 534 / 0 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G214200 [exp] 533 / 0 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G059000 [exp] 513 / 8e-180 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 511 / 4e-179 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.014G026100 [exp] 370 / 1e-123 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 360 / 4e-120 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G154000 [exp] 352 / 7e-117 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 351 / 1e-116 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036863 pacid=23171046 polypeptide=Lus10036863 locus=Lus10036863.g ID=Lus10036863.BGIv1.0 annot-version=v1.0 ATGGCGGCCGATCTGAAAACCGAGATGTCGAGGAAGACTGGGATCTTCGGCCTGCAAGTGTGGGAGATCATTTGCATATGCGTAGCCATTTTCGTCATTG TAATCCTTTCCTTCTCCATCTACCTAACCTCTCGCAAGAAGAAGTCCAGCAACAGACGAAGCCAACACCGGCAGCAGCAGGTTCAGCTCCCTGTCTCTCA AATCCCAGCCGTGTCCAAAGAGATCAAAGAGGTGTTTCAAATTGAGCAAGTTTCAACCGATCAGTTTGCGCCGAGGGATGGGGGGATTCTGCTCACGATC CATGATAAGTCGAATGAGAATGACTCTGATAAGATCCTTGTACACCTTGGGGTGGCTAAGAAGAATAAGAATGTTAATGGTAATGGTGCTGATAAGGCGA GTAGCCATGGAAGTTCGTTTCATCACCATGAGAAGGAACTCCATGGGGATCAAGAGGAATGTAGTTCGGCAGGTCGAGGCACCTCGGCTCATATCACTGC TCCTTCTCCGTTGAACGGCCTCCCTGAGTTCTCTCAATTGGGTTGGGGGCATTGGTTTACCCTCAGGGATCTTGAATTGGCTACTAATCGCTTCTCTAAG GACAATGTGCTTGGTGAGGGTGGTTATGGAGTTGTTTACCGTGGACATCTGGTCAATGGATCCCCTGTTGCTGTCAAGAAGATTTTAAACAACCTGGGTC AAGCCGAGAAGGAGTTCAGAGTCGAAGTTGAAGCCATCGGGCATGTACGGCATAAGAATTTGGTTCGACTTCTTGGTTATTGCATTGAAGGCACTCATAG GATGTTGGTGTATGAGTATGTGAACAATGGGAATTTGGAACAGTGGCTTCATGGAGCTATGCGCCACCATGGATATCTAACCTGGGAGGCCCGTATGAAA GTTCTCCTAGGCACAGCTAAGGCGCTTGCTTATTTGCACGATGCCATTGAGCCGAAAGTTGTGCATCGTGACATTAAATCCAGCAATATATTGATTGACG ACGACTTCAACGCCAAGGTTTCCGATTTTGGGCTGGCGAAGTTGCTTGGAGCTGGCAAAAGCCATGTCACTACTCGAGTCATGGGAACTTTCGGAACTCG ATCTCTGCAGGTTTATCTCGTCGATTGGCTGAAAATGATGGTTGGCAACCGAAGGTCAGAGGAAGTCGTCGATCCAAACATTGAGAGGAGGCCATCAACA AGAAGTCTGAAGAGAGCCCTGTTGACCGCCTTGAGATGTGTGGACCCAGACTCCGAGAAACGACCCAAGATGGGGCAAGTCGTGCGGATGCTCGAGTCCG AAGAGTACCCCATCCCACGAGAGGATCGTAGGCAGCGAAGAGCTCATGGTGGCAACAGCATTGAGACAGAATCCCAGAAGGAGAACTCGGATAGCGACTG TCCATTAGCAGCAGCAGGGGACAGCTCGAGAAGATTGTAA
AA sequence Show only first row Show all	>Lus10036863 pacid=23171046 polypeptide=Lus10036863 locus=Lus10036863.g ID=Lus10036863.BGIv1.0 annot-version=v1.0 MAADLKTEMSRKTGIFGLQVWEIICICVAIFVIVILSFSIYLTSRKKKSSNRRSQHRQQQVQLPVSQIPAVSKEIKEVFQIEQVSTDQFAPRDGGILLTI HDKSNENDSDKILVHLGVAKKNKNVNGNGADKASSHGSSFHHHEKELHGDQEECSSAGRGTSAHITAPSPLNGLPEFSQLGWGHWFTLRDLELATNRFSK DNVLGEGGYGVVYRGHLVNGSPVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARMK VLLGTAKALAYLHDAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGTRSLQVYLVDWLKMMVGNRRSEEVVDPNIERRPST RSLKRALLTALRCVDPDSEKRPKMGQVVRMLESEEYPIPREDRRQRRAHGGNSIETESQKENSDSDCPLAAAGDSSRRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56720			Protein kinase superfamily pro...		Lus10036863 [exp]	0	1
AT1G56720			Protein kinase superfamily pro...		Lus10006215 [exp]	3.0	0.9040
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10027059 [exp]	11.2	0.9137
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10024436 [exp]	14.3	0.9111
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10031650 [exp]	14.4	0.9128
AT5G57830			Protein of unknown function, D...		Lus10022171 [exp]	15.0	0.9101
AT2G27740			Family of unknown function (DU...		Lus10019529 [exp]	15.1	0.8826
AT1G11410			S-locus lectin protein kinase ...		Lus10042939 [exp]	18.7	0.9058
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10016302 [exp]	21.4	0.9073
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Lus10008737 [exp]	25.0	0.8889
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008225 [exp]	29.6	0.9060

Compare expression of checked genes

Lus10036863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.